Hb_011671_080

Information

Type -
Description -
Location Contig11671: 76159-80624
Sequence    

Annotation

kegg
ID pop:POPTR_0001s00820g
description hypothetical protein
nr
ID XP_012090461.1
description PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
swissprot
ID Q9FII5
description Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana GN=TDR PE=1 SV=1
trembl
ID A0A067JR02
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26271 PE=4 SV=1
Gene Ontology
ID GO:0016021
description leucine-rich repeat receptor-like protein kinase tdr

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05133: 76198-80012
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_080 0.0 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
2 Hb_000359_310 0.1182370273 - - hypothetical protein JCGZ_03934 [Jatropha curcas]
3 Hb_004088_040 0.1425823949 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform [Jatropha curcas]
4 Hb_001609_040 0.1444479406 - - hypothetical protein POPTR_0017s05650g [Populus trichocarpa]
5 Hb_000370_020 0.1454232539 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000742_020 0.1470994756 - - ARF GTPase activator, putative [Ricinus communis]
7 Hb_005183_170 0.1494330695 - - PREDICTED: pentatricopeptide repeat-containing protein At2g04860 [Jatropha curcas]
8 Hb_000679_230 0.151527383 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
9 Hb_113818_010 0.1556580488 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
10 Hb_003911_020 0.1591678808 - - PREDICTED: uncharacterized protein LOC105121332 [Populus euphratica]
11 Hb_001842_010 0.1596884642 - - serine/threonine protein kinase, putative [Ricinus communis]
12 Hb_002298_030 0.1607822427 - - PREDICTED: coenzyme Q-binding protein COQ10 homolog, mitochondrial [Jatropha curcas]
13 Hb_000244_180 0.1630600961 - - conserved hypothetical protein [Ricinus communis]
14 Hb_024074_020 0.1637368262 - - PREDICTED: probable serine/threonine-protein kinase At1g09600 [Jatropha curcas]
15 Hb_000748_030 0.1644005871 - - ATP binding protein, putative [Ricinus communis]
16 Hb_107495_040 0.165874394 - - PREDICTED: 12-oxophytodienoate reductase 2-like [Citrus sinensis]
17 Hb_000917_130 0.166269697 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
18 Hb_002660_110 0.1665053489 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
19 Hb_009661_030 0.1676763461 - - PREDICTED: SPX and EXS domain-containing protein 1-like [Jatropha curcas]
20 Hb_005993_010 0.1680759559 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]

Gene co-expression network

sample Hb_011671_080 Hb_011671_080 Hb_000359_310 Hb_000359_310 Hb_011671_080--Hb_000359_310 Hb_004088_040 Hb_004088_040 Hb_011671_080--Hb_004088_040 Hb_001609_040 Hb_001609_040 Hb_011671_080--Hb_001609_040 Hb_000370_020 Hb_000370_020 Hb_011671_080--Hb_000370_020 Hb_000742_020 Hb_000742_020 Hb_011671_080--Hb_000742_020 Hb_005183_170 Hb_005183_170 Hb_011671_080--Hb_005183_170 Hb_000359_310--Hb_000370_020 Hb_002289_060 Hb_002289_060 Hb_000359_310--Hb_002289_060 Hb_009661_030 Hb_009661_030 Hb_000359_310--Hb_009661_030 Hb_001946_180 Hb_001946_180 Hb_000359_310--Hb_001946_180 Hb_000062_540 Hb_000062_540 Hb_000359_310--Hb_000062_540 Hb_000256_150 Hb_000256_150 Hb_000359_310--Hb_000256_150 Hb_000197_020 Hb_000197_020 Hb_004088_040--Hb_000197_020 Hb_001507_120 Hb_001507_120 Hb_004088_040--Hb_001507_120 Hb_001633_200 Hb_001633_200 Hb_004088_040--Hb_001633_200 Hb_004088_040--Hb_000742_020 Hb_000705_230 Hb_000705_230 Hb_004088_040--Hb_000705_230 Hb_000066_030 Hb_000066_030 Hb_004088_040--Hb_000066_030 Hb_005993_010 Hb_005993_010 Hb_001609_040--Hb_005993_010 Hb_004055_120 Hb_004055_120 Hb_001609_040--Hb_004055_120 Hb_013394_050 Hb_013394_050 Hb_001609_040--Hb_013394_050 Hb_001609_040--Hb_000742_020 Hb_019181_030 Hb_019181_030 Hb_001609_040--Hb_019181_030 Hb_000152_600 Hb_000152_600 Hb_001609_040--Hb_000152_600 Hb_005023_010 Hb_005023_010 Hb_000370_020--Hb_005023_010 Hb_012395_170 Hb_012395_170 Hb_000370_020--Hb_012395_170 Hb_000370_020--Hb_000256_150 Hb_027380_220 Hb_027380_220 Hb_000370_020--Hb_027380_220 Hb_002495_080 Hb_002495_080 Hb_000370_020--Hb_002495_080 Hb_000742_020--Hb_013394_050 Hb_007441_080 Hb_007441_080 Hb_000742_020--Hb_007441_080 Hb_000742_020--Hb_005993_010 Hb_000069_640 Hb_000069_640 Hb_000742_020--Hb_000069_640 Hb_000244_170 Hb_000244_170 Hb_000742_020--Hb_000244_170 Hb_183610_010 Hb_183610_010 Hb_005183_170--Hb_183610_010 Hb_000984_310 Hb_000984_310 Hb_005183_170--Hb_000984_310 Hb_003617_020 Hb_003617_020 Hb_005183_170--Hb_003617_020 Hb_004117_120 Hb_004117_120 Hb_005183_170--Hb_004117_120 Hb_001486_190 Hb_001486_190 Hb_005183_170--Hb_001486_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.302 3.66601 6.71219 24.2494 3.54361 6.58641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.59373 7.42494 12.6735 4.09516 10.4519

CAGE analysis