Hb_000116_400

Information

Type -
Description -
Location Contig116: 343251-343871
Sequence    

Annotation

kegg
ID rcu:RCOM_0686320
description protein with unknown function
nr
ID XP_002526834.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9LM69
description RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=2 SV=1
trembl
ID B9SLG5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0686320 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04879: 343163-344036 , PASA_asmbl_04880: 343669-344023
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_400 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_000934_110 0.1519995367 - - PREDICTED: protein trichome berefringence-like 7 [Jatropha curcas]
3 Hb_005063_080 0.1576900344 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
4 Hb_001623_080 0.1637676426 - - calcineurin-like phosphoesterase [Manihot esculenta]
5 Hb_002320_090 0.166464524 - - PREDICTED: endoglucanase 25-like [Jatropha curcas]
6 Hb_000200_350 0.1709587762 - - PREDICTED: uncharacterized protein LOC105636929 [Jatropha curcas]
7 Hb_000964_170 0.171814763 - - Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis]
8 Hb_003777_250 0.1734254702 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
9 Hb_000107_250 0.1757651226 - - voltage-gated clc-type chloride channel, putative [Ricinus communis]
10 Hb_006916_050 0.1776925137 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
11 Hb_009079_050 0.1789222502 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
12 Hb_073973_120 0.1789321604 - - zinc finger protein, putative [Ricinus communis]
13 Hb_000281_070 0.179643456 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
14 Hb_005288_110 0.1801665222 - - PREDICTED: uncharacterized protein LOC105647752 [Jatropha curcas]
15 Hb_001579_200 0.1833199638 - - nucleoredoxin, putative [Ricinus communis]
16 Hb_000317_450 0.1853740829 - - PREDICTED: uncharacterized protein LOC105647032 isoform X1 [Jatropha curcas]
17 Hb_006916_030 0.1857010536 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
18 Hb_001049_150 0.1861594505 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
19 Hb_012262_040 0.1867614102 - - PREDICTED: uncharacterized protein LOC105633697 [Jatropha curcas]
20 Hb_001675_050 0.1870478199 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]

Gene co-expression network

sample Hb_000116_400 Hb_000116_400 Hb_000934_110 Hb_000934_110 Hb_000116_400--Hb_000934_110 Hb_005063_080 Hb_005063_080 Hb_000116_400--Hb_005063_080 Hb_001623_080 Hb_001623_080 Hb_000116_400--Hb_001623_080 Hb_002320_090 Hb_002320_090 Hb_000116_400--Hb_002320_090 Hb_000200_350 Hb_000200_350 Hb_000116_400--Hb_000200_350 Hb_000964_170 Hb_000964_170 Hb_000116_400--Hb_000964_170 Hb_000934_110--Hb_000200_350 Hb_000172_350 Hb_000172_350 Hb_000934_110--Hb_000172_350 Hb_000589_110 Hb_000589_110 Hb_000934_110--Hb_000589_110 Hb_005250_010 Hb_005250_010 Hb_000934_110--Hb_005250_010 Hb_007769_040 Hb_007769_040 Hb_000934_110--Hb_007769_040 Hb_003462_060 Hb_003462_060 Hb_000934_110--Hb_003462_060 Hb_005618_150 Hb_005618_150 Hb_005063_080--Hb_005618_150 Hb_000665_270 Hb_000665_270 Hb_005063_080--Hb_000665_270 Hb_001907_070 Hb_001907_070 Hb_005063_080--Hb_001907_070 Hb_006911_070 Hb_006911_070 Hb_005063_080--Hb_006911_070 Hb_006198_130 Hb_006198_130 Hb_005063_080--Hb_006198_130 Hb_000336_200 Hb_000336_200 Hb_005063_080--Hb_000336_200 Hb_001049_150 Hb_001049_150 Hb_001623_080--Hb_001049_150 Hb_001976_060 Hb_001976_060 Hb_001623_080--Hb_001976_060 Hb_004899_340 Hb_004899_340 Hb_001623_080--Hb_004899_340 Hb_000959_300 Hb_000959_300 Hb_001623_080--Hb_000959_300 Hb_000665_190 Hb_000665_190 Hb_001623_080--Hb_000665_190 Hb_011021_010 Hb_011021_010 Hb_001623_080--Hb_011021_010 Hb_002320_090--Hb_000964_170 Hb_006916_030 Hb_006916_030 Hb_002320_090--Hb_006916_030 Hb_000270_710 Hb_000270_710 Hb_002320_090--Hb_000270_710 Hb_001266_120 Hb_001266_120 Hb_002320_090--Hb_001266_120 Hb_003632_030 Hb_003632_030 Hb_002320_090--Hb_003632_030 Hb_001411_050 Hb_001411_050 Hb_002320_090--Hb_001411_050 Hb_006006_060 Hb_006006_060 Hb_000200_350--Hb_006006_060 Hb_010344_030 Hb_010344_030 Hb_000200_350--Hb_010344_030 Hb_009020_040 Hb_009020_040 Hb_000200_350--Hb_009020_040 Hb_001157_230 Hb_001157_230 Hb_000200_350--Hb_001157_230 Hb_024184_010 Hb_024184_010 Hb_000200_350--Hb_024184_010 Hb_000964_170--Hb_006916_030 Hb_000445_370 Hb_000445_370 Hb_000964_170--Hb_000445_370 Hb_000964_170--Hb_001411_050 Hb_001140_180 Hb_001140_180 Hb_000964_170--Hb_001140_180 Hb_000964_170--Hb_000270_710
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.93733 1.81946 3.98679 7.77186 5.60571 1.56794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.479886 1.81044 0.530346 2.19208 10.2738

CAGE analysis