Hb_000107_610

Information

Type -
Description -
Location Contig107: 477098-480034
Sequence    

Annotation

kegg
ID rcu:RCOM_1137890
description protein binding protein, putative
nr
ID XP_002515801.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q9LT24
description BTB/POZ domain-containing protein At3g19850 OS=Arabidopsis thaliana GN=At3g19850 PE=2 SV=1
trembl
ID B9RPY2
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1137890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02218: 477290-478833 , PASA_asmbl_02219: 478855-479276 , PASA_asmbl_02220: 480868-481250
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_610 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_159769_010 0.1628885445 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
3 Hb_000352_080 0.1769645245 - - PREDICTED: lipid transfer-like protein VAS [Jatropha curcas]
4 Hb_003891_060 0.1834434017 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Glycine max]
5 Hb_034585_020 0.1837137964 - - -
6 Hb_004217_010 0.1851180622 - - putative wall-associated kinase family protein [Populus trichocarpa]
7 Hb_000563_610 0.186912857 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Jatropha curcas]
8 Hb_007044_070 0.1870950296 - - PREDICTED: tetraketide alpha-pyrone reductase 1-like [Jatropha curcas]
9 Hb_005144_020 0.1873839447 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
10 Hb_000739_130 0.1880509695 - - conserved hypothetical protein [Ricinus communis]
11 Hb_010697_030 0.1889921781 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
12 Hb_001699_240 0.1901321662 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
13 Hb_002161_020 0.190440175 transcription factor TF Family: bZIP hypothetical protein POPTR_0006s05770g, partial [Populus trichocarpa]
14 Hb_004204_160 0.1908087147 - - S-locus-specific glycoprotein S6 precursor, putative [Ricinus communis]
15 Hb_000069_050 0.1915045152 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
16 Hb_001168_010 0.1916537311 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
17 Hb_022250_050 0.1918187094 - - conserved hypothetical protein [Ricinus communis]
18 Hb_156144_040 0.1920248224 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
19 Hb_000699_170 0.1920401315 - - myosin XI, putative [Ricinus communis]
20 Hb_002818_080 0.1957694989 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA20, putative [Ricinus communis]

Gene co-expression network

sample Hb_000107_610 Hb_000107_610 Hb_159769_010 Hb_159769_010 Hb_000107_610--Hb_159769_010 Hb_000352_080 Hb_000352_080 Hb_000107_610--Hb_000352_080 Hb_003891_060 Hb_003891_060 Hb_000107_610--Hb_003891_060 Hb_034585_020 Hb_034585_020 Hb_000107_610--Hb_034585_020 Hb_004217_010 Hb_004217_010 Hb_000107_610--Hb_004217_010 Hb_000563_610 Hb_000563_610 Hb_000107_610--Hb_000563_610 Hb_039655_010 Hb_039655_010 Hb_159769_010--Hb_039655_010 Hb_000281_200 Hb_000281_200 Hb_159769_010--Hb_000281_200 Hb_000135_050 Hb_000135_050 Hb_159769_010--Hb_000135_050 Hb_022250_050 Hb_022250_050 Hb_159769_010--Hb_022250_050 Hb_005356_010 Hb_005356_010 Hb_159769_010--Hb_005356_010 Hb_007527_020 Hb_007527_020 Hb_159769_010--Hb_007527_020 Hb_001134_040 Hb_001134_040 Hb_000352_080--Hb_001134_040 Hb_000352_080--Hb_003891_060 Hb_000155_140 Hb_000155_140 Hb_000352_080--Hb_000155_140 Hb_058620_010 Hb_058620_010 Hb_000352_080--Hb_058620_010 Hb_002805_230 Hb_002805_230 Hb_000352_080--Hb_002805_230 Hb_007417_020 Hb_007417_020 Hb_000352_080--Hb_007417_020 Hb_003891_060--Hb_000155_140 Hb_000446_100 Hb_000446_100 Hb_003891_060--Hb_000446_100 Hb_004254_070 Hb_004254_070 Hb_003891_060--Hb_004254_070 Hb_001901_090 Hb_001901_090 Hb_003891_060--Hb_001901_090 Hb_001456_040 Hb_001456_040 Hb_003891_060--Hb_001456_040 Hb_131864_020 Hb_131864_020 Hb_034585_020--Hb_131864_020 Hb_007044_070 Hb_007044_070 Hb_034585_020--Hb_007044_070 Hb_001168_010 Hb_001168_010 Hb_034585_020--Hb_001168_010 Hb_001775_050 Hb_001775_050 Hb_034585_020--Hb_001775_050 Hb_000631_130 Hb_000631_130 Hb_034585_020--Hb_000631_130 Hb_000057_160 Hb_000057_160 Hb_034585_020--Hb_000057_160 Hb_000140_240 Hb_000140_240 Hb_004217_010--Hb_000140_240 Hb_001571_010 Hb_001571_010 Hb_004217_010--Hb_001571_010 Hb_071381_010 Hb_071381_010 Hb_004217_010--Hb_071381_010 Hb_004217_010--Hb_000352_080 Hb_004217_010--Hb_003891_060 Hb_000405_040 Hb_000405_040 Hb_004217_010--Hb_000405_040 Hb_004055_180 Hb_004055_180 Hb_000563_610--Hb_004055_180 Hb_000739_130 Hb_000739_130 Hb_000563_610--Hb_000739_130 Hb_000245_140 Hb_000245_140 Hb_000563_610--Hb_000245_140 Hb_097908_010 Hb_097908_010 Hb_000563_610--Hb_097908_010 Hb_012796_050 Hb_012796_050 Hb_000563_610--Hb_012796_050 Hb_004774_060 Hb_004774_060 Hb_000563_610--Hb_004774_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0411451 0.113422 0.260764 0.0519521 0.0118317 0.054226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0537531 0.0211459 0.0798282 3.42119 0

CAGE analysis