Hb_034585_020

Information

Type -
Description -
Location Contig34585: 22963-24801
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36086: 23128-23486 , PASA_asmbl_36087: 24134-24617
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034585_020 0.0 - - -
2 Hb_131864_020 0.1538301644 - - PREDICTED: anthocyanidin reductase [Jatropha curcas]
3 Hb_007044_070 0.1545272008 - - PREDICTED: tetraketide alpha-pyrone reductase 1-like [Jatropha curcas]
4 Hb_001168_010 0.1582511386 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
5 Hb_001775_050 0.1605072063 - - ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
6 Hb_000631_130 0.1654183744 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]
7 Hb_000057_160 0.17101008 - - hypothetical protein JCGZ_06279 [Jatropha curcas]
8 Hb_020902_020 0.1731448304 - - hypothetical protein JCGZ_07820 [Jatropha curcas]
9 Hb_025469_040 0.1757553392 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
10 Hb_000038_090 0.1822720165 transcription factor TF Family: NAC hypothetical protein POPTR_0002s05820g [Populus trichocarpa]
11 Hb_012796_050 0.1827177691 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
12 Hb_000107_610 0.1837137964 - - protein binding protein, putative [Ricinus communis]
13 Hb_004586_080 0.1848882157 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
14 Hb_000327_300 0.1849315084 - - PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
15 Hb_005653_100 0.1852571515 - - hypothetical protein POPTR_0004s19580g [Populus trichocarpa]
16 Hb_000563_610 0.1861626864 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Jatropha curcas]
17 Hb_000407_110 0.1863223865 - - ripening-induced ACC oxidase [Carica papaya]
18 Hb_008080_040 0.1881340532 - - hypothetical protein EUGRSUZ_D00834 [Eucalyptus grandis]
19 Hb_000245_140 0.1885835062 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]
20 Hb_001268_330 0.1893106796 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_034585_020 Hb_034585_020 Hb_131864_020 Hb_131864_020 Hb_034585_020--Hb_131864_020 Hb_007044_070 Hb_007044_070 Hb_034585_020--Hb_007044_070 Hb_001168_010 Hb_001168_010 Hb_034585_020--Hb_001168_010 Hb_001775_050 Hb_001775_050 Hb_034585_020--Hb_001775_050 Hb_000631_130 Hb_000631_130 Hb_034585_020--Hb_000631_130 Hb_000057_160 Hb_000057_160 Hb_034585_020--Hb_000057_160 Hb_025469_040 Hb_025469_040 Hb_131864_020--Hb_025469_040 Hb_001473_100 Hb_001473_100 Hb_131864_020--Hb_001473_100 Hb_131864_020--Hb_007044_070 Hb_131864_020--Hb_000631_130 Hb_000815_280 Hb_000815_280 Hb_131864_020--Hb_000815_280 Hb_000589_100 Hb_000589_100 Hb_131864_020--Hb_000589_100 Hb_007044_070--Hb_000631_130 Hb_007044_070--Hb_025469_040 Hb_007044_070--Hb_001473_100 Hb_001936_030 Hb_001936_030 Hb_007044_070--Hb_001936_030 Hb_142522_030 Hb_142522_030 Hb_007044_070--Hb_142522_030 Hb_000327_300 Hb_000327_300 Hb_001168_010--Hb_000327_300 Hb_000245_140 Hb_000245_140 Hb_001168_010--Hb_000245_140 Hb_001168_010--Hb_000631_130 Hb_004586_080 Hb_004586_080 Hb_001168_010--Hb_004586_080 Hb_008080_040 Hb_008080_040 Hb_001168_010--Hb_008080_040 Hb_000038_090 Hb_000038_090 Hb_001168_010--Hb_000038_090 Hb_020902_020 Hb_020902_020 Hb_001775_050--Hb_020902_020 Hb_129204_050 Hb_129204_050 Hb_001775_050--Hb_129204_050 Hb_001369_320 Hb_001369_320 Hb_001775_050--Hb_001369_320 Hb_001775_050--Hb_000057_160 Hb_005653_100 Hb_005653_100 Hb_001775_050--Hb_005653_100 Hb_001454_300 Hb_001454_300 Hb_001775_050--Hb_001454_300 Hb_000631_130--Hb_000038_090 Hb_000631_130--Hb_001473_100 Hb_000631_130--Hb_025469_040 Hb_000933_200 Hb_000933_200 Hb_000631_130--Hb_000933_200 Hb_000057_160--Hb_001369_320 Hb_001279_220 Hb_001279_220 Hb_000057_160--Hb_001279_220 Hb_000057_160--Hb_001454_300 Hb_000057_160--Hb_129204_050 Hb_029571_010 Hb_029571_010 Hb_000057_160--Hb_029571_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0285686 0.937757 1.79043 0.230191 0.0133783 0.264307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.195319 0.0512199 0.0480481 9.78786 0.21398

CAGE analysis