Hb_000010_310

Information

Type -
Description -
Location Contig10: 351745-353818
Sequence    

Annotation

kegg
ID pop:POPTR_0015s09930g
description POPTRDRAFT_575272; pectate lyase 22 precursor family protein
nr
ID XP_011005597.1
description PREDICTED: probable pectate lyase 18 [Populus euphratica]
swissprot
ID Q93Z25
description Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1
trembl
ID B9IF26
description Pectate lyase OS=Populus trichocarpa GN=POPTR_0015s09930g PE=3 SV=1
Gene Ontology
ID GO:0030570
description pectate lyase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00165: 351569-353510
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_310 0.0 - - PREDICTED: probable pectate lyase 18 [Populus euphratica]
2 Hb_000110_050 0.1336210438 - - -
3 Hb_000062_090 0.1518965823 - - PREDICTED: uncharacterized protein LOC105644743 isoform X2 [Jatropha curcas]
4 Hb_000402_130 0.154037743 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
5 Hb_048476_060 0.1560673349 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
6 Hb_000244_170 0.1615167554 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
7 Hb_000217_020 0.1619758818 - - AMME syndrome candidateprotein 1 protein, putative [Ricinus communis]
8 Hb_012305_130 0.1632571727 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
9 Hb_075247_010 0.1634255733 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
10 Hb_004158_020 0.1655066451 - - Rab1 [Hevea brasiliensis]
11 Hb_000038_120 0.1671698112 - - PREDICTED: endoglucanase 9-like [Jatropha curcas]
12 Hb_012760_050 0.1672971118 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]
13 Hb_002811_280 0.1691856833 - - PREDICTED: probable aldo-keto reductase 1 [Jatropha curcas]
14 Hb_000742_160 0.1706431971 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g20940 [Jatropha curcas]
15 Hb_007894_010 0.1706724342 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
16 Hb_011930_150 0.1718611529 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
17 Hb_000765_060 0.1725163551 - - Alcohol dehydrogenase-like 6 [Glycine soja]
18 Hb_000953_130 0.1738442137 - - PREDICTED: fructose-bisphosphate aldolase cytoplasmic isozyme [Jatropha curcas]
19 Hb_021409_080 0.1747520271 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
20 Hb_006711_090 0.1748701328 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000010_310 Hb_000010_310 Hb_000110_050 Hb_000110_050 Hb_000010_310--Hb_000110_050 Hb_000062_090 Hb_000062_090 Hb_000010_310--Hb_000062_090 Hb_000402_130 Hb_000402_130 Hb_000010_310--Hb_000402_130 Hb_048476_060 Hb_048476_060 Hb_000010_310--Hb_048476_060 Hb_000244_170 Hb_000244_170 Hb_000010_310--Hb_000244_170 Hb_000217_020 Hb_000217_020 Hb_000010_310--Hb_000217_020 Hb_002811_280 Hb_002811_280 Hb_000110_050--Hb_002811_280 Hb_000110_050--Hb_048476_060 Hb_000110_050--Hb_000402_130 Hb_012305_130 Hb_012305_130 Hb_000110_050--Hb_012305_130 Hb_001817_100 Hb_001817_100 Hb_000110_050--Hb_001817_100 Hb_002110_100 Hb_002110_100 Hb_000110_050--Hb_002110_100 Hb_000062_090--Hb_000402_130 Hb_000062_090--Hb_048476_060 Hb_006711_090 Hb_006711_090 Hb_000062_090--Hb_006711_090 Hb_004158_020 Hb_004158_020 Hb_000062_090--Hb_004158_020 Hb_000671_130 Hb_000671_130 Hb_000062_090--Hb_000671_130 Hb_012362_030 Hb_012362_030 Hb_000062_090--Hb_012362_030 Hb_005701_120 Hb_005701_120 Hb_000402_130--Hb_005701_120 Hb_033152_070 Hb_033152_070 Hb_000402_130--Hb_033152_070 Hb_000402_130--Hb_002110_100 Hb_003207_020 Hb_003207_020 Hb_000402_130--Hb_003207_020 Hb_000060_050 Hb_000060_050 Hb_000402_130--Hb_000060_050 Hb_000025_190 Hb_000025_190 Hb_000402_130--Hb_000025_190 Hb_002193_060 Hb_002193_060 Hb_048476_060--Hb_002193_060 Hb_185830_060 Hb_185830_060 Hb_048476_060--Hb_185830_060 Hb_048476_060--Hb_003207_020 Hb_048476_060--Hb_000402_130 Hb_002007_320 Hb_002007_320 Hb_048476_060--Hb_002007_320 Hb_003244_020 Hb_003244_020 Hb_000244_170--Hb_003244_020 Hb_000062_330 Hb_000062_330 Hb_000244_170--Hb_000062_330 Hb_013394_050 Hb_013394_050 Hb_000244_170--Hb_013394_050 Hb_007894_010 Hb_007894_010 Hb_000244_170--Hb_007894_010 Hb_002184_090 Hb_002184_090 Hb_000244_170--Hb_002184_090 Hb_000197_020 Hb_000197_020 Hb_000244_170--Hb_000197_020 Hb_000392_340 Hb_000392_340 Hb_000217_020--Hb_000392_340 Hb_019181_030 Hb_019181_030 Hb_000217_020--Hb_019181_030 Hb_001951_130 Hb_001951_130 Hb_000217_020--Hb_001951_130 Hb_002960_130 Hb_002960_130 Hb_000217_020--Hb_002960_130 Hb_004032_030 Hb_004032_030 Hb_000217_020--Hb_004032_030 Hb_001208_040 Hb_001208_040 Hb_000217_020--Hb_001208_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.1253 23.4773 102.306 258.539 47.5237 9.4835
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.065 74.2274 102.493 89.1015 41.9472

CAGE analysis