Hb_173107_010

Information

Type -
Description -
Location Contig173107: 5531-12526
Sequence    

Annotation

kegg
ID rcu:RCOM_1441940
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID XP_012067488.1
description PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
swissprot
ID Q76CU2
description Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1
trembl
ID B9RGL9
description ATP-binding cassette transporter, putative OS=Ricinus communis GN=RCOM_1441940 PE=4 SV=1
Gene Ontology
ID GO:0016020
description pleiotropic drug resistance protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16493: 5513-9895
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_173107_010 0.0 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
2 Hb_002571_110 0.1072286614 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
3 Hb_001377_080 0.1219334269 - - PREDICTED: uncharacterized protein LOC105642864 [Jatropha curcas]
4 Hb_006555_020 0.1226025022 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
5 Hb_001284_050 0.1303837917 - - PREDICTED: uncharacterized protein LOC100781779 isoform X1 [Glycine max]
6 Hb_014658_010 0.1315241598 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
7 Hb_007761_040 0.132574718 - - carbonyl reductase, putative [Ricinus communis]
8 Hb_001935_050 0.1365645542 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
9 Hb_000864_040 0.1380280269 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000189_610 0.1387438564 - - Late embryogenesis abundant protein D-34, putative [Ricinus communis]
11 Hb_001543_010 0.1389600914 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010904_020 0.140209457 - - PREDICTED: probable receptor-like protein kinase At5g39030 [Populus euphratica]
13 Hb_124540_010 0.140755551 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1-like [Populus euphratica]
14 Hb_014870_010 0.140768794 - - PREDICTED: uncharacterized protein LOC104891359 [Beta vulgaris subsp. vulgaris]
15 Hb_001085_280 0.1417901786 transcription factor TF Family: bHLH PREDICTED: transcription factor FAMA isoform X2 [Populus euphratica]
16 Hb_000165_170 0.1428722054 transcription factor TF Family: G2-like hypothetical protein POPTR_0010s19310g [Populus trichocarpa]
17 Hb_096267_010 0.144173031 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
18 Hb_003683_170 0.1474505579 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000084_270 0.1478039209 - - hypothetical protein POPTR_0006s22820g [Populus trichocarpa]
20 Hb_048476_090 0.1482974604 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_173107_010 Hb_173107_010 Hb_002571_110 Hb_002571_110 Hb_173107_010--Hb_002571_110 Hb_001377_080 Hb_001377_080 Hb_173107_010--Hb_001377_080 Hb_006555_020 Hb_006555_020 Hb_173107_010--Hb_006555_020 Hb_001284_050 Hb_001284_050 Hb_173107_010--Hb_001284_050 Hb_014658_010 Hb_014658_010 Hb_173107_010--Hb_014658_010 Hb_007761_040 Hb_007761_040 Hb_173107_010--Hb_007761_040 Hb_000084_270 Hb_000084_270 Hb_002571_110--Hb_000084_270 Hb_000186_020 Hb_000186_020 Hb_002571_110--Hb_000186_020 Hb_014870_010 Hb_014870_010 Hb_002571_110--Hb_014870_010 Hb_002571_110--Hb_007761_040 Hb_007676_090 Hb_007676_090 Hb_002571_110--Hb_007676_090 Hb_003428_020 Hb_003428_020 Hb_002571_110--Hb_003428_020 Hb_000030_070 Hb_000030_070 Hb_001377_080--Hb_000030_070 Hb_001377_080--Hb_006555_020 Hb_003683_170 Hb_003683_170 Hb_001377_080--Hb_003683_170 Hb_005618_030 Hb_005618_030 Hb_001377_080--Hb_005618_030 Hb_096267_010 Hb_096267_010 Hb_001377_080--Hb_096267_010 Hb_001287_020 Hb_001287_020 Hb_001377_080--Hb_001287_020 Hb_006555_020--Hb_096267_010 Hb_006555_020--Hb_000030_070 Hb_006555_020--Hb_005618_030 Hb_000011_510 Hb_000011_510 Hb_006555_020--Hb_000011_510 Hb_048476_090 Hb_048476_090 Hb_006555_020--Hb_048476_090 Hb_001284_050--Hb_048476_090 Hb_000334_020 Hb_000334_020 Hb_001284_050--Hb_000334_020 Hb_000016_140 Hb_000016_140 Hb_001284_050--Hb_000016_140 Hb_099335_010 Hb_099335_010 Hb_001284_050--Hb_099335_010 Hb_006261_020 Hb_006261_020 Hb_001284_050--Hb_006261_020 Hb_001033_080 Hb_001033_080 Hb_001284_050--Hb_001033_080 Hb_152180_010 Hb_152180_010 Hb_014658_010--Hb_152180_010 Hb_014658_010--Hb_002571_110 Hb_004554_010 Hb_004554_010 Hb_014658_010--Hb_004554_010 Hb_001476_040 Hb_001476_040 Hb_014658_010--Hb_001476_040 Hb_014658_010--Hb_000186_020 Hb_011900_030 Hb_011900_030 Hb_007761_040--Hb_011900_030 Hb_007761_040--Hb_014870_010 Hb_001935_050 Hb_001935_050 Hb_007761_040--Hb_001935_050 Hb_000864_040 Hb_000864_040 Hb_007761_040--Hb_000864_040 Hb_007761_040--Hb_000084_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00757798 0.977093 0.0146949 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0413884 0.689244

CAGE analysis