Hb_146834_010

Information

Type -
Description -
Location Contig146834: 13-395
Sequence    

Annotation

kegg
ID tcc:TCM_035385
description hypothetical protein
nr
ID XP_007019354.1
description Uncharacterized protein TCM_035385 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061FPX3
description Uncharacterized protein OS=Theobroma cacao GN=TCM_035385 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_146834_010 0.0 - - Uncharacterized protein TCM_035385 [Theobroma cacao]
2 Hb_048702_010 0.2318158786 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X1 [Jatropha curcas]
3 Hb_012707_010 0.2403514599 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
4 Hb_007527_070 0.2439164616 - - PREDICTED: uncharacterized protein LOC105637197 [Jatropha curcas]
5 Hb_000566_180 0.2513491014 transcription factor TF Family: M-type PREDICTED: MADS-box transcription factor 7-like [Jatropha curcas]
6 Hb_003397_020 0.2538204453 - - -
7 Hb_000103_250 0.2564771369 transcription factor TF Family: Tify PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
8 Hb_017014_010 0.2566607583 - - PREDICTED: syntaxin-132-like isoform X1 [Jatropha curcas]
9 Hb_000586_030 0.2579455285 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
10 Hb_010577_010 0.2583761215 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase-like [Populus euphratica]
11 Hb_007456_020 0.2590933002 - - unknown [Lotus japonicus]
12 Hb_033683_020 0.260406157 - - hypothetical protein POPTR_1072s00200g [Populus trichocarpa]
13 Hb_001006_220 0.2641952821 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Jatropha curcas]
14 Hb_002909_110 0.2642618005 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
15 Hb_091349_010 0.2643636332 - - hypothetical protein EUGRSUZ_C02287 [Eucalyptus grandis]
16 Hb_004225_110 0.2645512749 - - PREDICTED: ABC transporter G family member 28 [Jatropha curcas]
17 Hb_002157_270 0.2658678336 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
18 Hb_001894_070 0.2675592339 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X1 [Jatropha curcas]
19 Hb_007574_070 0.2678236777 - - fatty acid desaturase, putative [Ricinus communis]
20 Hb_006910_050 0.2681787558 - - hypothetical protein CISIN_1g0480481mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_146834_010 Hb_146834_010 Hb_048702_010 Hb_048702_010 Hb_146834_010--Hb_048702_010 Hb_012707_010 Hb_012707_010 Hb_146834_010--Hb_012707_010 Hb_007527_070 Hb_007527_070 Hb_146834_010--Hb_007527_070 Hb_000566_180 Hb_000566_180 Hb_146834_010--Hb_000566_180 Hb_003397_020 Hb_003397_020 Hb_146834_010--Hb_003397_020 Hb_000103_250 Hb_000103_250 Hb_146834_010--Hb_000103_250 Hb_006634_110 Hb_006634_110 Hb_048702_010--Hb_006634_110 Hb_100137_010 Hb_100137_010 Hb_048702_010--Hb_100137_010 Hb_002611_030 Hb_002611_030 Hb_048702_010--Hb_002611_030 Hb_017014_010 Hb_017014_010 Hb_048702_010--Hb_017014_010 Hb_122636_010 Hb_122636_010 Hb_048702_010--Hb_122636_010 Hb_010577_010 Hb_010577_010 Hb_048702_010--Hb_010577_010 Hb_000950_030 Hb_000950_030 Hb_012707_010--Hb_000950_030 Hb_000696_070 Hb_000696_070 Hb_012707_010--Hb_000696_070 Hb_001486_350 Hb_001486_350 Hb_012707_010--Hb_001486_350 Hb_000806_130 Hb_000806_130 Hb_012707_010--Hb_000806_130 Hb_002157_270 Hb_002157_270 Hb_012707_010--Hb_002157_270 Hb_001989_100 Hb_001989_100 Hb_012707_010--Hb_001989_100 Hb_006910_050 Hb_006910_050 Hb_007527_070--Hb_006910_050 Hb_007527_070--Hb_002611_030 Hb_000168_010 Hb_000168_010 Hb_007527_070--Hb_000168_010 Hb_130367_010 Hb_130367_010 Hb_007527_070--Hb_130367_010 Hb_047691_010 Hb_047691_010 Hb_007527_070--Hb_047691_010 Hb_121694_010 Hb_121694_010 Hb_007527_070--Hb_121694_010 Hb_005271_230 Hb_005271_230 Hb_000566_180--Hb_005271_230 Hb_057796_010 Hb_057796_010 Hb_000566_180--Hb_057796_010 Hb_001404_080 Hb_001404_080 Hb_000566_180--Hb_001404_080 Hb_006274_040 Hb_006274_040 Hb_000566_180--Hb_006274_040 Hb_012490_110 Hb_012490_110 Hb_000566_180--Hb_012490_110 Hb_050034_010 Hb_050034_010 Hb_000566_180--Hb_050034_010 Hb_033683_020 Hb_033683_020 Hb_003397_020--Hb_033683_020 Hb_000115_370 Hb_000115_370 Hb_003397_020--Hb_000115_370 Hb_003397_020--Hb_000950_030 Hb_169018_010 Hb_169018_010 Hb_003397_020--Hb_169018_010 Hb_004627_010 Hb_004627_010 Hb_003397_020--Hb_004627_010 Hb_004055_020 Hb_004055_020 Hb_003397_020--Hb_004055_020 Hb_000066_030 Hb_000066_030 Hb_000103_250--Hb_000066_030 Hb_000703_280 Hb_000703_280 Hb_000103_250--Hb_000703_280 Hb_005218_020 Hb_005218_020 Hb_000103_250--Hb_005218_020 Hb_000742_020 Hb_000742_020 Hb_000103_250--Hb_000742_020 Hb_000889_100 Hb_000889_100 Hb_000103_250--Hb_000889_100 Hb_000665_180 Hb_000665_180 Hb_000103_250--Hb_000665_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.123053 0.0828677 0.394725 2.37789 0 1.03063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.174958 0.824563 0.607153 1.5067

CAGE analysis