Hb_143629_070

Information

Type -
Description -
Location Contig143629: 58650-59009
Sequence    

Annotation

kegg
ID rcu:RCOM_1437170
description hypothetical protein
nr
ID XP_012088797.1
description PREDICTED: uncharacterized protein LOC105647357 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RFT1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143629_070 0.0 - - PREDICTED: uncharacterized protein LOC105647357 [Jatropha curcas]
2 Hb_001635_150 0.3192232521 - - hypothetical protein JCGZ_24809 [Jatropha curcas]
3 Hb_000088_220 0.3243907273 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
4 Hb_002026_010 0.3439453623 transcription factor TF Family: mTERF hypothetical protein CICLE_v10020375mg [Citrus clementina]
5 Hb_000222_030 0.3451619605 - - -
6 Hb_002974_040 0.3459131763 - - GRF zinc finger containing protein [Medicago truncatula]
7 Hb_005725_200 0.3524505099 transcription factor TF Family: GRF hypothetical protein JCGZ_15989 [Jatropha curcas]
8 Hb_002232_090 0.3661150671 - - STS14 protein precursor, putative [Ricinus communis]
9 Hb_000215_370 0.37309143 - - myoinositol oxygenase, putative [Ricinus communis]
10 Hb_006671_020 0.3730966932 - - hypothetical protein CISIN_1g0407181mg, partial [Citrus sinensis]
11 Hb_003992_230 0.3776531713 - - PREDICTED: uncharacterized protein LOC105634858 [Jatropha curcas]
12 Hb_001946_350 0.3777385117 - - PREDICTED: uncharacterized protein LOC105639338 [Jatropha curcas]
13 Hb_006472_070 0.3786528586 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
14 Hb_005725_230 0.3787353206 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
15 Hb_000696_020 0.3804269826 - - hypothetical protein JCGZ_25344 [Jatropha curcas]
16 Hb_004102_050 0.3810997363 - - JHL25H03.10 [Jatropha curcas]
17 Hb_007904_250 0.3824073223 - - PREDICTED: vignain-like [Jatropha curcas]
18 Hb_007527_030 0.3831844718 - - -
19 Hb_001913_020 0.3871852492 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001124_040 0.3895925214 - - PREDICTED: uncharacterized protein LOC103413595 [Malus domestica]

Gene co-expression network

sample Hb_143629_070 Hb_143629_070 Hb_001635_150 Hb_001635_150 Hb_143629_070--Hb_001635_150 Hb_000088_220 Hb_000088_220 Hb_143629_070--Hb_000088_220 Hb_002026_010 Hb_002026_010 Hb_143629_070--Hb_002026_010 Hb_000222_030 Hb_000222_030 Hb_143629_070--Hb_000222_030 Hb_002974_040 Hb_002974_040 Hb_143629_070--Hb_002974_040 Hb_005725_200 Hb_005725_200 Hb_143629_070--Hb_005725_200 Hb_015057_050 Hb_015057_050 Hb_001635_150--Hb_015057_050 Hb_001635_150--Hb_002026_010 Hb_003845_020 Hb_003845_020 Hb_001635_150--Hb_003845_020 Hb_001635_150--Hb_000222_030 Hb_000414_110 Hb_000414_110 Hb_001635_150--Hb_000414_110 Hb_032264_080 Hb_032264_080 Hb_000088_220--Hb_032264_080 Hb_000369_010 Hb_000369_010 Hb_000088_220--Hb_000369_010 Hb_000088_220--Hb_005725_200 Hb_004342_020 Hb_004342_020 Hb_000088_220--Hb_004342_020 Hb_006671_020 Hb_006671_020 Hb_000088_220--Hb_006671_020 Hb_000120_250 Hb_000120_250 Hb_000088_220--Hb_000120_250 Hb_006615_070 Hb_006615_070 Hb_002026_010--Hb_006615_070 Hb_044653_080 Hb_044653_080 Hb_002026_010--Hb_044653_080 Hb_010883_200 Hb_010883_200 Hb_002026_010--Hb_010883_200 Hb_000394_110 Hb_000394_110 Hb_002026_010--Hb_000394_110 Hb_002026_010--Hb_002974_040 Hb_010578_010 Hb_010578_010 Hb_002026_010--Hb_010578_010 Hb_001946_350 Hb_001946_350 Hb_000222_030--Hb_001946_350 Hb_000926_100 Hb_000926_100 Hb_000222_030--Hb_000926_100 Hb_138710_010 Hb_138710_010 Hb_000222_030--Hb_138710_010 Hb_000120_720 Hb_000120_720 Hb_000222_030--Hb_000120_720 Hb_002685_150 Hb_002685_150 Hb_000222_030--Hb_002685_150 Hb_001390_030 Hb_001390_030 Hb_000222_030--Hb_001390_030 Hb_002974_040--Hb_010883_200 Hb_004204_050 Hb_004204_050 Hb_002974_040--Hb_004204_050 Hb_002631_320 Hb_002631_320 Hb_002974_040--Hb_002631_320 Hb_000866_280 Hb_000866_280 Hb_002974_040--Hb_000866_280 Hb_000256_140 Hb_000256_140 Hb_002974_040--Hb_000256_140 Hb_001645_140 Hb_001645_140 Hb_002974_040--Hb_001645_140 Hb_000679_120 Hb_000679_120 Hb_005725_200--Hb_000679_120 Hb_000321_080 Hb_000321_080 Hb_005725_200--Hb_000321_080 Hb_005725_200--Hb_001946_350 Hb_032208_020 Hb_032208_020 Hb_005725_200--Hb_032208_020 Hb_044662_050 Hb_044662_050 Hb_005725_200--Hb_044662_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.413425 0.184367 1.05182 0 0 0.0951809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.193457 0.298587 0.680232 0

CAGE analysis