Hb_010578_010

Information

Type transcription factor
Description TF Family: bZIP
Location Contig10578: 26250-31228
Sequence    

Annotation

kegg
ID rcu:RCOM_0484650
description Light-inducible protein CPRF-2, putative
nr
ID XP_012089255.1
description PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
swissprot
ID Q99090
description Light-inducible protein CPRF2 OS=Petroselinum crispum GN=CPRF2 PE=2 SV=2
trembl
ID A0A067JI80
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23494 PE=4 SV=1
Gene Ontology
ID GO:0005515
description light-inducible protein cprf2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01898: 26265-31240 , PASA_asmbl_01899: 29597-30165 , PASA_asmbl_01900: 29605-30165
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010578_010 0.0 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
2 Hb_127194_010 0.1948096321 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
3 Hb_001123_200 0.1996502351 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000475_040 0.2151983669 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
5 Hb_168978_020 0.2155871449 - - hypothetical protein POPTR_0002s10960g [Populus trichocarpa]
6 Hb_006615_070 0.220113014 - - hypothetical protein RCOM_1466910 [Ricinus communis]
7 Hb_000394_110 0.2268406874 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
8 Hb_002849_140 0.243254848 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
9 Hb_000029_080 0.248644644 - - PREDICTED: cold-inducible RNA-binding protein B-like [Jatropha curcas]
10 Hb_000805_110 0.2486534416 - - PREDICTED: uncharacterized protein C24B11.05 [Jatropha curcas]
11 Hb_000976_280 0.2501213722 - - PREDICTED: uncharacterized serine-rich protein C215.13-like [Jatropha curcas]
12 Hb_000510_230 0.2539706309 - - PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]
13 Hb_001377_360 0.2557318845 transcription factor TF Family: ARF PREDICTED: auxin response factor 18 [Jatropha curcas]
14 Hb_002028_140 0.2568858776 transcription factor TF Family: Tify JAZ11 [Hevea brasiliensis]
15 Hb_004920_070 0.2574900775 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
16 Hb_004324_300 0.2578343252 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
17 Hb_001484_020 0.2599364138 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
18 Hb_003605_240 0.2625804197 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
19 Hb_000343_180 0.2642109958 - - NDWp3 [Podospora anserina]
20 Hb_177215_040 0.2646486416 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010578_010 Hb_010578_010 Hb_127194_010 Hb_127194_010 Hb_010578_010--Hb_127194_010 Hb_001123_200 Hb_001123_200 Hb_010578_010--Hb_001123_200 Hb_000475_040 Hb_000475_040 Hb_010578_010--Hb_000475_040 Hb_168978_020 Hb_168978_020 Hb_010578_010--Hb_168978_020 Hb_006615_070 Hb_006615_070 Hb_010578_010--Hb_006615_070 Hb_000394_110 Hb_000394_110 Hb_010578_010--Hb_000394_110 Hb_127194_010--Hb_000394_110 Hb_000321_160 Hb_000321_160 Hb_127194_010--Hb_000321_160 Hb_000805_110 Hb_000805_110 Hb_127194_010--Hb_000805_110 Hb_004324_300 Hb_004324_300 Hb_127194_010--Hb_004324_300 Hb_127194_010--Hb_000475_040 Hb_002028_140 Hb_002028_140 Hb_127194_010--Hb_002028_140 Hb_003605_240 Hb_003605_240 Hb_001123_200--Hb_003605_240 Hb_001377_360 Hb_001377_360 Hb_001123_200--Hb_001377_360 Hb_000179_240 Hb_000179_240 Hb_001123_200--Hb_000179_240 Hb_000976_280 Hb_000976_280 Hb_001123_200--Hb_000976_280 Hb_002685_200 Hb_002685_200 Hb_001123_200--Hb_002685_200 Hb_001123_200--Hb_004324_300 Hb_000086_340 Hb_000086_340 Hb_000475_040--Hb_000086_340 Hb_149714_010 Hb_149714_010 Hb_000475_040--Hb_149714_010 Hb_000302_260 Hb_000302_260 Hb_000475_040--Hb_000302_260 Hb_000475_040--Hb_001123_200 Hb_000210_010 Hb_000210_010 Hb_000475_040--Hb_000210_010 Hb_001564_080 Hb_001564_080 Hb_168978_020--Hb_001564_080 Hb_000975_360 Hb_000975_360 Hb_168978_020--Hb_000975_360 Hb_005551_050 Hb_005551_050 Hb_168978_020--Hb_005551_050 Hb_168978_020--Hb_004324_300 Hb_168978_020--Hb_000805_110 Hb_007426_180 Hb_007426_180 Hb_168978_020--Hb_007426_180 Hb_002026_010 Hb_002026_010 Hb_006615_070--Hb_002026_010 Hb_006615_070--Hb_000475_040 Hb_006615_070--Hb_000394_110 Hb_006615_070--Hb_001123_200 Hb_007558_020 Hb_007558_020 Hb_006615_070--Hb_007558_020 Hb_000510_230 Hb_000510_230 Hb_000394_110--Hb_000510_230 Hb_000057_140 Hb_000057_140 Hb_000394_110--Hb_000057_140 Hb_001959_010 Hb_001959_010 Hb_000394_110--Hb_001959_010 Hb_000394_110--Hb_007558_020 Hb_098533_020 Hb_098533_020 Hb_000394_110--Hb_098533_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.6257 186.795 162.924 14.2325 13.7126 16.7437
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
179.566 106.917 77.7024 12.6528 14.7757

CAGE analysis