Hb_168978_020

Information

Type -
Description -
Location Contig168978: 30608-34176
Sequence    

Annotation

kegg
ID pop:POPTR_0002s10960g
description POPTRDRAFT_816409; hypothetical protein
nr
ID XP_002302355.1
description hypothetical protein POPTR_0002s10960g [Populus trichocarpa]
swissprot
ID Q9SZJ2
description Glycine-rich domain-containing protein 2 OS=Arabidopsis thaliana GN=GRDP2 PE=2 SV=1
trembl
ID B9GN66
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s10960g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168978_020 0.0 - - hypothetical protein POPTR_0002s10960g [Populus trichocarpa]
2 Hb_001564_080 0.166148946 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
3 Hb_000975_360 0.1724027023 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005551_050 0.1734249085 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
5 Hb_004324_300 0.1772732621 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
6 Hb_000805_110 0.1790170705 - - PREDICTED: uncharacterized protein C24B11.05 [Jatropha curcas]
7 Hb_007426_180 0.180176797 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
8 Hb_005653_060 0.1814089487 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Jatropha curcas]
9 Hb_127194_010 0.1882530246 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
10 Hb_115241_010 0.1905374662 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
11 Hb_000210_010 0.1938122615 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
12 Hb_000462_130 0.1958306793 - - hypothetical protein CICLE_v10009355mg [Citrus clementina]
13 Hb_003747_220 0.1983661001 - - PREDICTED: syntaxin-22-like isoform X2 [Jatropha curcas]
14 Hb_002028_140 0.1985842915 transcription factor TF Family: Tify JAZ11 [Hevea brasiliensis]
15 Hb_002016_150 0.1995811137 - - PREDICTED: uncharacterized protein LOC105642512 [Jatropha curcas]
16 Hb_001856_200 0.2001095878 - - Esterase PIR7B, putative [Ricinus communis]
17 Hb_000086_060 0.2003066077 - - PREDICTED: TOM1-like protein 2 isoform X2 [Populus euphratica]
18 Hb_008062_070 0.201906018 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
19 Hb_000732_250 0.2025923025 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial-like [Populus euphratica]
20 Hb_000679_090 0.2026536727 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]

Gene co-expression network

sample Hb_168978_020 Hb_168978_020 Hb_001564_080 Hb_001564_080 Hb_168978_020--Hb_001564_080 Hb_000975_360 Hb_000975_360 Hb_168978_020--Hb_000975_360 Hb_005551_050 Hb_005551_050 Hb_168978_020--Hb_005551_050 Hb_004324_300 Hb_004324_300 Hb_168978_020--Hb_004324_300 Hb_000805_110 Hb_000805_110 Hb_168978_020--Hb_000805_110 Hb_007426_180 Hb_007426_180 Hb_168978_020--Hb_007426_180 Hb_005653_060 Hb_005653_060 Hb_001564_080--Hb_005653_060 Hb_001894_050 Hb_001894_050 Hb_001564_080--Hb_001894_050 Hb_001564_080--Hb_005551_050 Hb_189208_020 Hb_189208_020 Hb_001564_080--Hb_189208_020 Hb_001817_160 Hb_001817_160 Hb_001564_080--Hb_001817_160 Hb_115241_010 Hb_115241_010 Hb_001564_080--Hb_115241_010 Hb_000975_360--Hb_115241_010 Hb_002042_130 Hb_002042_130 Hb_000975_360--Hb_002042_130 Hb_000465_230 Hb_000465_230 Hb_000975_360--Hb_000465_230 Hb_021888_050 Hb_021888_050 Hb_000975_360--Hb_021888_050 Hb_001189_140 Hb_001189_140 Hb_000975_360--Hb_001189_140 Hb_000975_360--Hb_001894_050 Hb_005551_050--Hb_007426_180 Hb_003376_350 Hb_003376_350 Hb_005551_050--Hb_003376_350 Hb_005551_050--Hb_005653_060 Hb_000679_090 Hb_000679_090 Hb_005551_050--Hb_000679_090 Hb_004032_270 Hb_004032_270 Hb_005551_050--Hb_004032_270 Hb_000856_380 Hb_000856_380 Hb_004324_300--Hb_000856_380 Hb_003020_270 Hb_003020_270 Hb_004324_300--Hb_003020_270 Hb_007943_050 Hb_007943_050 Hb_004324_300--Hb_007943_050 Hb_002234_100 Hb_002234_100 Hb_004324_300--Hb_002234_100 Hb_000210_010 Hb_000210_010 Hb_004324_300--Hb_000210_010 Hb_000010_240 Hb_000010_240 Hb_004324_300--Hb_000010_240 Hb_000211_030 Hb_000211_030 Hb_000805_110--Hb_000211_030 Hb_000309_130 Hb_000309_130 Hb_000805_110--Hb_000309_130 Hb_002217_020 Hb_002217_020 Hb_000805_110--Hb_002217_020 Hb_000367_160 Hb_000367_160 Hb_000805_110--Hb_000367_160 Hb_000086_140 Hb_000086_140 Hb_000805_110--Hb_000086_140 Hb_009904_010 Hb_009904_010 Hb_000805_110--Hb_009904_010 Hb_007426_180--Hb_000679_090 Hb_001552_020 Hb_001552_020 Hb_007426_180--Hb_001552_020 Hb_000500_100 Hb_000500_100 Hb_007426_180--Hb_000500_100 Hb_002256_030 Hb_002256_030 Hb_007426_180--Hb_002256_030 Hb_007426_180--Hb_003376_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0959167 0.226699 0.0975894 0.0608673 0.0795019 0.0174629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.249508 0.212686 0.124336 0.026018 0.034648

CAGE analysis