Hb_002026_010

Information

Type transcription factor
Description TF Family: mTERF
Location Contig2026: 16663-17067
Sequence    

Annotation

kegg
ID cic:CICLE_v10020375mg
description hypothetical protein
nr
ID XP_006444257.1
description hypothetical protein CICLE_v10020375mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID A0A067HHC0
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015151mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002026_010 0.0 transcription factor TF Family: mTERF hypothetical protein CICLE_v10020375mg [Citrus clementina]
2 Hb_006615_070 0.2040248989 - - hypothetical protein RCOM_1466910 [Ricinus communis]
3 Hb_044653_080 0.2567128745 - - Uncharacterized protein TCM_045144 [Theobroma cacao]
4 Hb_010883_200 0.2644755786 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
5 Hb_000394_110 0.2736290111 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
6 Hb_002974_040 0.2935696767 - - GRF zinc finger containing protein [Medicago truncatula]
7 Hb_010578_010 0.2971566386 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
8 Hb_000010_240 0.2991574693 - - Protein bem46, putative [Ricinus communis]
9 Hb_001959_010 0.304674903 - - myosin XI, putative [Ricinus communis]
10 Hb_000120_250 0.3067059363 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
11 Hb_001635_150 0.3075465617 - - hypothetical protein JCGZ_24809 [Jatropha curcas]
12 Hb_000475_040 0.307872469 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
13 Hb_001776_220 0.3079306935 - - -
14 Hb_000866_280 0.3131481279 - - PREDICTED: seven transmembrane domain-containing tyrosine-protein kinase 1-like [Jatropha curcas]
15 Hb_189216_030 0.3141398745 - - Pleiotropic drug resistance protein, putative [Ricinus communis]
16 Hb_000057_140 0.3146317969 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
17 Hb_004920_070 0.3150409059 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
18 Hb_002950_090 0.3167082881 - - -
19 Hb_002631_320 0.3176167798 - - hypothetical protein JCGZ_22628 [Jatropha curcas]
20 Hb_174829_020 0.3185701782 transcription factor TF Family: C2C2-Dof cyclic dof factor 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002026_010 Hb_002026_010 Hb_006615_070 Hb_006615_070 Hb_002026_010--Hb_006615_070 Hb_044653_080 Hb_044653_080 Hb_002026_010--Hb_044653_080 Hb_010883_200 Hb_010883_200 Hb_002026_010--Hb_010883_200 Hb_000394_110 Hb_000394_110 Hb_002026_010--Hb_000394_110 Hb_002974_040 Hb_002974_040 Hb_002026_010--Hb_002974_040 Hb_010578_010 Hb_010578_010 Hb_002026_010--Hb_010578_010 Hb_006615_070--Hb_010578_010 Hb_000475_040 Hb_000475_040 Hb_006615_070--Hb_000475_040 Hb_006615_070--Hb_000394_110 Hb_001123_200 Hb_001123_200 Hb_006615_070--Hb_001123_200 Hb_007558_020 Hb_007558_020 Hb_006615_070--Hb_007558_020 Hb_004193_010 Hb_004193_010 Hb_044653_080--Hb_004193_010 Hb_092408_010 Hb_092408_010 Hb_044653_080--Hb_092408_010 Hb_052764_040 Hb_052764_040 Hb_044653_080--Hb_052764_040 Hb_000432_090 Hb_000432_090 Hb_044653_080--Hb_000432_090 Hb_001486_010 Hb_001486_010 Hb_044653_080--Hb_001486_010 Hb_000010_240 Hb_000010_240 Hb_010883_200--Hb_000010_240 Hb_004109_040 Hb_004109_040 Hb_010883_200--Hb_004109_040 Hb_010883_200--Hb_002974_040 Hb_002681_060 Hb_002681_060 Hb_010883_200--Hb_002681_060 Hb_000983_090 Hb_000983_090 Hb_010883_200--Hb_000983_090 Hb_001477_070 Hb_001477_070 Hb_010883_200--Hb_001477_070 Hb_000510_230 Hb_000510_230 Hb_000394_110--Hb_000510_230 Hb_127194_010 Hb_127194_010 Hb_000394_110--Hb_127194_010 Hb_000057_140 Hb_000057_140 Hb_000394_110--Hb_000057_140 Hb_001959_010 Hb_001959_010 Hb_000394_110--Hb_001959_010 Hb_000394_110--Hb_007558_020 Hb_098533_020 Hb_098533_020 Hb_000394_110--Hb_098533_020 Hb_004204_050 Hb_004204_050 Hb_002974_040--Hb_004204_050 Hb_002631_320 Hb_002631_320 Hb_002974_040--Hb_002631_320 Hb_000866_280 Hb_000866_280 Hb_002974_040--Hb_000866_280 Hb_000256_140 Hb_000256_140 Hb_002974_040--Hb_000256_140 Hb_001645_140 Hb_001645_140 Hb_002974_040--Hb_001645_140 Hb_010578_010--Hb_127194_010 Hb_010578_010--Hb_001123_200 Hb_010578_010--Hb_000475_040 Hb_168978_020 Hb_168978_020 Hb_010578_010--Hb_168978_020 Hb_010578_010--Hb_000394_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.107042 0.17449 0.406441 0 0 0.0747716
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.194603 0.152853 0.245576 0.130681 0

CAGE analysis