Hb_142911_010

Information

Type -
Description -
Location Contig142911: 34611-40090
Sequence    

Annotation

kegg
ID pop:POPTR_0001s22230g
description POPTRDRAFT_1067740; hypothetical protein
nr
ID XP_012066360.1
description PREDICTED: probable receptor-like protein kinase At1g49730 [Jatropha curcas]
swissprot
ID P93756
description G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 OS=Arabidopsis thaliana GN=SD31 PE=3 SV=1
trembl
ID A0A067L6U5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23910 PE=4 SV=1
Gene Ontology
ID GO:0005886
description probable receptor-like protein kinase at1g49730 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11345: 34657-40079
cDNA
(Sanger)
(ID:Location)		 021_F16.ab1: 35116-39995

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_142911_010 0.0 - - PREDICTED: probable receptor-like protein kinase At1g49730 [Jatropha curcas]
2 Hb_004724_390 0.1061115669 - - PREDICTED: nicalin-1-like [Populus euphratica]
3 Hb_000497_190 0.1112446184 - - sterol isomerase, putative [Ricinus communis]
4 Hb_002473_050 0.1157333744 - - catalytic, putative [Ricinus communis]
5 Hb_004228_120 0.1177220841 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
6 Hb_000261_210 0.1189774699 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
7 Hb_029584_120 0.1193093994 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
8 Hb_002284_100 0.119655738 - - ribophorin, putative [Ricinus communis]
9 Hb_000054_040 0.1203580648 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]
10 Hb_000258_220 0.1280021558 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
11 Hb_000836_300 0.1281761132 - - caax prenyl protease ste24, putative [Ricinus communis]
12 Hb_011214_110 0.1345816728 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
13 Hb_001450_020 0.1353150167 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Jatropha curcas]
14 Hb_000035_080 0.135577883 - - PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]
15 Hb_161568_010 0.1363013527 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
16 Hb_004064_040 0.1377835848 - - PREDICTED: Down syndrome critical region protein 3 homolog isoform X3 [Jatropha curcas]
17 Hb_000656_160 0.138551038 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
18 Hb_000154_050 0.1424300334 - - CMP-sialic acid transporter, putative [Ricinus communis]
19 Hb_002552_040 0.142956432 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
20 Hb_000056_160 0.14401972 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_142911_010 Hb_142911_010 Hb_004724_390 Hb_004724_390 Hb_142911_010--Hb_004724_390 Hb_000497_190 Hb_000497_190 Hb_142911_010--Hb_000497_190 Hb_002473_050 Hb_002473_050 Hb_142911_010--Hb_002473_050 Hb_004228_120 Hb_004228_120 Hb_142911_010--Hb_004228_120 Hb_000261_210 Hb_000261_210 Hb_142911_010--Hb_000261_210 Hb_029584_120 Hb_029584_120 Hb_142911_010--Hb_029584_120 Hb_002045_170 Hb_002045_170 Hb_004724_390--Hb_002045_170 Hb_002687_180 Hb_002687_180 Hb_004724_390--Hb_002687_180 Hb_004724_390--Hb_000497_190 Hb_000317_110 Hb_000317_110 Hb_004724_390--Hb_000317_110 Hb_004724_390--Hb_004228_120 Hb_012760_030 Hb_012760_030 Hb_004724_390--Hb_012760_030 Hb_161568_010 Hb_161568_010 Hb_000497_190--Hb_161568_010 Hb_000497_190--Hb_000261_210 Hb_000154_050 Hb_000154_050 Hb_000497_190--Hb_000154_050 Hb_001450_020 Hb_001450_020 Hb_000497_190--Hb_001450_020 Hb_005730_010 Hb_005730_010 Hb_000497_190--Hb_005730_010 Hb_002473_050--Hb_000261_210 Hb_000054_040 Hb_000054_040 Hb_002473_050--Hb_000054_040 Hb_025668_010 Hb_025668_010 Hb_002473_050--Hb_025668_010 Hb_000101_080 Hb_000101_080 Hb_002473_050--Hb_000101_080 Hb_007982_030 Hb_007982_030 Hb_002473_050--Hb_007982_030 Hb_002351_030 Hb_002351_030 Hb_002473_050--Hb_002351_030 Hb_001279_190 Hb_001279_190 Hb_004228_120--Hb_001279_190 Hb_004228_120--Hb_002687_180 Hb_002552_040 Hb_002552_040 Hb_004228_120--Hb_002552_040 Hb_159809_070 Hb_159809_070 Hb_004228_120--Hb_159809_070 Hb_001227_120 Hb_001227_120 Hb_004228_120--Hb_001227_120 Hb_011716_010 Hb_011716_010 Hb_004228_120--Hb_011716_010 Hb_000261_210--Hb_000054_040 Hb_001002_060 Hb_001002_060 Hb_000261_210--Hb_001002_060 Hb_000261_210--Hb_025668_010 Hb_000261_210--Hb_002351_030 Hb_000371_090 Hb_000371_090 Hb_000261_210--Hb_000371_090 Hb_000001_090 Hb_000001_090 Hb_029584_120--Hb_000001_090 Hb_000258_220 Hb_000258_220 Hb_029584_120--Hb_000258_220 Hb_074399_010 Hb_074399_010 Hb_029584_120--Hb_074399_010 Hb_029584_120--Hb_004724_390 Hb_000866_070 Hb_000866_070 Hb_029584_120--Hb_000866_070 Hb_002942_230 Hb_002942_230 Hb_029584_120--Hb_002942_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.05655 2.11534 7.59234 7.37139 4.76743 2.54571
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.759814 1.46096 2.09648 4.52521 3.15502

CAGE analysis