Hb_127704_010

Information

Type -
Description -
Location Contig127704: 15575-20054
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_127704_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_023755_010 0.2295343556 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_006076_010 0.2476465956 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
4 Hb_005285_020 0.2540898095 - - -
5 Hb_000883_030 0.2790288526 - - PREDICTED: uncharacterized protein LOC105636683 [Jatropha curcas]
6 Hb_003032_020 0.2796563834 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55740, chloroplastic [Jatropha curcas]
7 Hb_000608_200 0.2801377935 - - PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Pyrus x bretschneideri]
8 Hb_000251_090 0.2868725357 - - PREDICTED: two-pore potassium channel 3-like [Jatropha curcas]
9 Hb_000948_150 0.2893594915 - - PREDICTED: heme-binding-like protein At3g10130, chloroplastic [Jatropha curcas]
10 Hb_000976_230 0.2901030176 - - PREDICTED: probable terpene synthase 4 [Jatropha curcas]
11 Hb_104812_010 0.2947534324 - - PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Populus euphratica]
12 Hb_001159_190 0.2964338593 - - amino acid binding protein, putative [Ricinus communis]
13 Hb_000116_300 0.2979773246 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_000069_710 0.2992825878 - - PREDICTED: uncharacterized protein LOC105642890 [Jatropha curcas]
15 Hb_000705_160 0.2997870632 - - hypothetical protein CISIN_1g042743mg [Citrus sinensis]
16 Hb_000567_380 0.2998157912 - - ubiquitin specific protease 39 and snrnp assembly factor, putative [Ricinus communis]
17 Hb_067402_010 0.3039278374 - - hypothetical protein CISIN_1g0029712mg, partial [Citrus sinensis]
18 Hb_000215_080 0.304762836 - - PREDICTED: uncharacterized protein LOC105637840 isoform X1 [Jatropha curcas]
19 Hb_000335_020 0.3047752331 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_001322_170 0.3054917175 - - PREDICTED: bax inhibitor 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_127704_010 Hb_127704_010 Hb_023755_010 Hb_023755_010 Hb_127704_010--Hb_023755_010 Hb_006076_010 Hb_006076_010 Hb_127704_010--Hb_006076_010 Hb_005285_020 Hb_005285_020 Hb_127704_010--Hb_005285_020 Hb_000883_030 Hb_000883_030 Hb_127704_010--Hb_000883_030 Hb_003032_020 Hb_003032_020 Hb_127704_010--Hb_003032_020 Hb_000608_200 Hb_000608_200 Hb_127704_010--Hb_000608_200 Hb_023755_010--Hb_003032_020 Hb_000442_080 Hb_000442_080 Hb_023755_010--Hb_000442_080 Hb_000215_140 Hb_000215_140 Hb_023755_010--Hb_000215_140 Hb_000251_090 Hb_000251_090 Hb_023755_010--Hb_000251_090 Hb_000335_020 Hb_000335_020 Hb_023755_010--Hb_000335_020 Hb_023755_010--Hb_000883_030 Hb_000116_300 Hb_000116_300 Hb_006076_010--Hb_000116_300 Hb_004968_100 Hb_004968_100 Hb_006076_010--Hb_004968_100 Hb_001946_410 Hb_001946_410 Hb_006076_010--Hb_001946_410 Hb_046198_010 Hb_046198_010 Hb_006076_010--Hb_046198_010 Hb_000567_380 Hb_000567_380 Hb_006076_010--Hb_000567_380 Hb_000116_010 Hb_000116_010 Hb_006076_010--Hb_000116_010 Hb_000215_080 Hb_000215_080 Hb_005285_020--Hb_000215_080 Hb_008695_140 Hb_008695_140 Hb_005285_020--Hb_008695_140 Hb_031862_130 Hb_031862_130 Hb_005285_020--Hb_031862_130 Hb_000197_250 Hb_000197_250 Hb_005285_020--Hb_000197_250 Hb_000854_040 Hb_000854_040 Hb_005285_020--Hb_000854_040 Hb_000948_150 Hb_000948_150 Hb_005285_020--Hb_000948_150 Hb_004117_100 Hb_004117_100 Hb_000883_030--Hb_004117_100 Hb_003912_030 Hb_003912_030 Hb_000883_030--Hb_003912_030 Hb_000363_460 Hb_000363_460 Hb_000883_030--Hb_000363_460 Hb_001440_040 Hb_001440_040 Hb_000883_030--Hb_001440_040 Hb_002233_100 Hb_002233_100 Hb_000883_030--Hb_002233_100 Hb_000853_210 Hb_000853_210 Hb_000883_030--Hb_000853_210 Hb_007820_010 Hb_007820_010 Hb_003032_020--Hb_007820_010 Hb_027472_070 Hb_027472_070 Hb_003032_020--Hb_027472_070 Hb_002099_080 Hb_002099_080 Hb_003032_020--Hb_002099_080 Hb_000352_190 Hb_000352_190 Hb_003032_020--Hb_000352_190 Hb_002063_020 Hb_002063_020 Hb_003032_020--Hb_002063_020 Hb_000366_040 Hb_000366_040 Hb_003032_020--Hb_000366_040 Hb_048626_010 Hb_048626_010 Hb_000608_200--Hb_048626_010 Hb_000608_200--Hb_023755_010 Hb_005511_090 Hb_005511_090 Hb_000608_200--Hb_005511_090 Hb_031421_010 Hb_031421_010 Hb_000608_200--Hb_031421_010 Hb_000608_200--Hb_000883_030 Hb_002875_050 Hb_002875_050 Hb_000608_200--Hb_002875_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00470235 0.00773023 0.0109743 0.013102 0.0317154 0.00410377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00838263 0.0483083 0.00331992 0.0179674

CAGE analysis