Hb_090361_010

Information

Type -
Description -
Location Contig90361: 3647-6508
Sequence    

Annotation

kegg
ID rcu:RCOM_0688710
description amino acid transporter, putative
nr
ID XP_002520822.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID Q5I012
description Putative sodium-coupled neutral amino acid transporter 10 OS=Mus musculus GN=Slc38a10 PE=2 SV=2
trembl
ID B9S4A3
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_0688710 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61975: 3960-6584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_090361_010 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_145603_010 0.0928542672 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
3 Hb_143871_010 0.1471000999 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
4 Hb_006185_040 0.1490827451 - - PREDICTED: verprolin [Jatropha curcas]
5 Hb_009222_080 0.1557499638 - - RING-H2 finger protein ATL2J, putative [Ricinus communis]
6 Hb_002685_220 0.15694319 - - PREDICTED: cationic amino acid transporter 4, vacuolar-like isoform X1 [Jatropha curcas]
7 Hb_005725_160 0.1649587877 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
8 Hb_000956_100 0.1657738851 - - Cucumisin precursor, putative [Ricinus communis]
9 Hb_000270_750 0.168933325 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
10 Hb_000753_150 0.1690824954 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
11 Hb_000834_100 0.169971567 - - PREDICTED: uncharacterized protein LOC105178355 [Sesamum indicum]
12 Hb_000256_220 0.1706134287 - - PREDICTED: flotillin-like protein 4 [Jatropha curcas]
13 Hb_002010_070 0.1731007076 - - hypothetical protein EUGRSUZ_I027342, partial [Eucalyptus grandis]
14 Hb_027892_050 0.17574596 - - hypothetical protein PHAVU_009G226400g [Phaseolus vulgaris]
15 Hb_002344_080 0.1786233431 - - PREDICTED: protein YLS2-like [Populus euphratica]
16 Hb_011161_090 0.1792532344 - - -
17 Hb_000245_100 0.1793021384 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
18 Hb_001950_100 0.181205511 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]
19 Hb_013420_080 0.1822976574 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000363_250 0.1825628578 - - PREDICTED: pirin-like protein [Malus domestica]

Gene co-expression network

sample Hb_090361_010 Hb_090361_010 Hb_145603_010 Hb_145603_010 Hb_090361_010--Hb_145603_010 Hb_143871_010 Hb_143871_010 Hb_090361_010--Hb_143871_010 Hb_006185_040 Hb_006185_040 Hb_090361_010--Hb_006185_040 Hb_009222_080 Hb_009222_080 Hb_090361_010--Hb_009222_080 Hb_002685_220 Hb_002685_220 Hb_090361_010--Hb_002685_220 Hb_005725_160 Hb_005725_160 Hb_090361_010--Hb_005725_160 Hb_000256_220 Hb_000256_220 Hb_145603_010--Hb_000256_220 Hb_145603_010--Hb_009222_080 Hb_000245_100 Hb_000245_100 Hb_145603_010--Hb_000245_100 Hb_145603_010--Hb_006185_040 Hb_000270_750 Hb_000270_750 Hb_145603_010--Hb_000270_750 Hb_031862_120 Hb_031862_120 Hb_143871_010--Hb_031862_120 Hb_000753_150 Hb_000753_150 Hb_143871_010--Hb_000753_150 Hb_000834_100 Hb_000834_100 Hb_143871_010--Hb_000834_100 Hb_000427_040 Hb_000427_040 Hb_143871_010--Hb_000427_040 Hb_005051_010 Hb_005051_010 Hb_143871_010--Hb_005051_010 Hb_000326_080 Hb_000326_080 Hb_143871_010--Hb_000326_080 Hb_001013_050 Hb_001013_050 Hb_006185_040--Hb_001013_050 Hb_005408_100 Hb_005408_100 Hb_006185_040--Hb_005408_100 Hb_002510_100 Hb_002510_100 Hb_006185_040--Hb_002510_100 Hb_006185_040--Hb_000270_750 Hb_000181_230 Hb_000181_230 Hb_006185_040--Hb_000181_230 Hb_000363_250 Hb_000363_250 Hb_006185_040--Hb_000363_250 Hb_009222_080--Hb_002685_220 Hb_006916_140 Hb_006916_140 Hb_009222_080--Hb_006916_140 Hb_009222_080--Hb_005725_160 Hb_010968_030 Hb_010968_030 Hb_009222_080--Hb_010968_030 Hb_005329_030 Hb_005329_030 Hb_009222_080--Hb_005329_030 Hb_009222_080--Hb_000245_100 Hb_002097_080 Hb_002097_080 Hb_002685_220--Hb_002097_080 Hb_000107_550 Hb_000107_550 Hb_002685_220--Hb_000107_550 Hb_002740_100 Hb_002740_100 Hb_002685_220--Hb_002740_100 Hb_002495_030 Hb_002495_030 Hb_002685_220--Hb_002495_030 Hb_001976_020 Hb_001976_020 Hb_002685_220--Hb_001976_020 Hb_001950_100 Hb_001950_100 Hb_005725_160--Hb_001950_100 Hb_001232_040 Hb_001232_040 Hb_005725_160--Hb_001232_040 Hb_003097_220 Hb_003097_220 Hb_005725_160--Hb_003097_220 Hb_000622_030 Hb_000622_030 Hb_005725_160--Hb_000622_030 Hb_002168_070 Hb_002168_070 Hb_005725_160--Hb_002168_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0789084 15.8439 3.54852 19.8067 1.2313 2.16396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.23183 5.07416 19.567

CAGE analysis