Hb_000256_220

Information

Type -
Description -
Location Contig256: 279199-282027
Sequence    

Annotation

kegg
ID pop:POPTR_0018s02190g
description POPTRDRAFT_779089; nodulin family protein
nr
ID XP_012076481.1
description PREDICTED: flotillin-like protein 4 [Jatropha curcas]
swissprot
ID D2XNQ8
description Flotillin-like protein 1 OS=Medicago truncatula GN=FLOT1 PE=2 SV=1
trembl
ID A0A067KBM9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07123 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26707: 279244-279843 , PASA_asmbl_26708: 279871-281580
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000256_220 0.0 - - PREDICTED: flotillin-like protein 4 [Jatropha curcas]
2 Hb_002066_010 0.1378265553 - - PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]
3 Hb_000270_750 0.1453771268 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
4 Hb_145603_010 0.1472089769 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
5 Hb_002973_030 0.1606213364 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
6 Hb_001318_230 0.1616991185 - - Boron transporter, putative [Ricinus communis]
7 Hb_007103_020 0.1653325733 - - hypothetical protein POPTR_0007s04191g [Populus trichocarpa]
8 Hb_030949_010 0.167864529 - - hypothetical protein POPTR_0001s24140g [Populus trichocarpa]
9 Hb_027892_050 0.1694965104 - - hypothetical protein PHAVU_009G226400g [Phaseolus vulgaris]
10 Hb_000956_100 0.1699818767 - - Cucumisin precursor, putative [Ricinus communis]
11 Hb_090361_010 0.1706134287 - - amino acid transporter, putative [Ricinus communis]
12 Hb_001907_050 0.1712630998 - - Receptor like protein 6, putative [Theobroma cacao]
13 Hb_005725_160 0.171603326 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
14 Hb_000342_120 0.1768396252 - - PREDICTED: probable protein phosphatase 2C 72 [Jatropha curcas]
15 Hb_006185_040 0.1778728217 - - PREDICTED: verprolin [Jatropha curcas]
16 Hb_002004_010 0.1795376162 - - CBL-interacting protein kinase 9 [Populus trichocarpa]
17 Hb_000258_230 0.1799942252 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005588_130 0.1809795617 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002335_010 0.1837281027 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
20 Hb_020301_010 0.184144094 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_000256_220 Hb_000256_220 Hb_002066_010 Hb_002066_010 Hb_000256_220--Hb_002066_010 Hb_000270_750 Hb_000270_750 Hb_000256_220--Hb_000270_750 Hb_145603_010 Hb_145603_010 Hb_000256_220--Hb_145603_010 Hb_002973_030 Hb_002973_030 Hb_000256_220--Hb_002973_030 Hb_001318_230 Hb_001318_230 Hb_000256_220--Hb_001318_230 Hb_007103_020 Hb_007103_020 Hb_000256_220--Hb_007103_020 Hb_000258_230 Hb_000258_230 Hb_002066_010--Hb_000258_230 Hb_000172_070 Hb_000172_070 Hb_002066_010--Hb_000172_070 Hb_152277_010 Hb_152277_010 Hb_002066_010--Hb_152277_010 Hb_002066_010--Hb_007103_020 Hb_002250_140 Hb_002250_140 Hb_002066_010--Hb_002250_140 Hb_002066_010--Hb_000270_750 Hb_173107_020 Hb_173107_020 Hb_000270_750--Hb_173107_020 Hb_009771_040 Hb_009771_040 Hb_000270_750--Hb_009771_040 Hb_114733_010 Hb_114733_010 Hb_000270_750--Hb_114733_010 Hb_000270_750--Hb_002250_140 Hb_002168_070 Hb_002168_070 Hb_000270_750--Hb_002168_070 Hb_001269_530 Hb_001269_530 Hb_000270_750--Hb_001269_530 Hb_090361_010 Hb_090361_010 Hb_145603_010--Hb_090361_010 Hb_009222_080 Hb_009222_080 Hb_145603_010--Hb_009222_080 Hb_000245_100 Hb_000245_100 Hb_145603_010--Hb_000245_100 Hb_006185_040 Hb_006185_040 Hb_145603_010--Hb_006185_040 Hb_145603_010--Hb_000270_750 Hb_002004_010 Hb_002004_010 Hb_002973_030--Hb_002004_010 Hb_002973_030--Hb_002066_010 Hb_000479_060 Hb_000479_060 Hb_002973_030--Hb_000479_060 Hb_000753_120 Hb_000753_120 Hb_002973_030--Hb_000753_120 Hb_002973_030--Hb_000270_750 Hb_013405_100 Hb_013405_100 Hb_002973_030--Hb_013405_100 Hb_000732_100 Hb_000732_100 Hb_001318_230--Hb_000732_100 Hb_001907_050 Hb_001907_050 Hb_001318_230--Hb_001907_050 Hb_000537_090 Hb_000537_090 Hb_001318_230--Hb_000537_090 Hb_002598_020 Hb_002598_020 Hb_001318_230--Hb_002598_020 Hb_000090_020 Hb_000090_020 Hb_001318_230--Hb_000090_020 Hb_004785_170 Hb_004785_170 Hb_001318_230--Hb_004785_170 Hb_007103_020--Hb_000258_230 Hb_027892_050 Hb_027892_050 Hb_007103_020--Hb_027892_050 Hb_007103_020--Hb_009771_040 Hb_007103_020--Hb_152277_010 Hb_007103_020--Hb_002250_140 Hb_005790_010 Hb_005790_010 Hb_007103_020--Hb_005790_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.034618 5.54064 0.639894 7.40733 0.390819 0.151812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.190295 0.174661 0 0.796921 4.69534

CAGE analysis