Hb_078494_010

Information

Type transcription factor
Description TF Family: NAC
Location Contig78494: 375-1340
Sequence    

Annotation

kegg
ID rcu:RCOM_1341410
description transcription factor, putative
nr
ID XP_012089947.1
description PREDICTED: NAC domain-containing protein 4-like [Jatropha curcas]
swissprot
ID Q9SCK6
description NAC domain-containing protein 62 OS=Arabidopsis thaliana GN=NAC062 PE=1 SV=1
trembl
ID A0A067JRM5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02834 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_078494_010 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 4-like [Jatropha curcas]
2 Hb_001017_050 0.1037967478 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
3 Hb_012633_040 0.1301497481 - - -
4 Hb_003494_200 0.132572495 - - PREDICTED: beta-1,3-galactosyltransferase 15-like [Jatropha curcas]
5 Hb_012035_050 0.1328267953 - - hypothetical protein JCGZ_10788 [Jatropha curcas]
6 Hb_012506_050 0.1378525871 transcription factor TF Family: SNF2 PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 isoform X1 [Jatropha curcas]
7 Hb_011716_070 0.1409915028 transcription factor TF Family: HRT PREDICTED: uncharacterized protein LOC105637858 isoform X1 [Jatropha curcas]
8 Hb_000130_410 0.1428293296 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
9 Hb_000220_220 0.1467884455 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
10 Hb_009558_030 0.1473985648 - - myb3r3, putative [Ricinus communis]
11 Hb_000015_040 0.1491371405 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
12 Hb_001579_220 0.154029031 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
13 Hb_029584_050 0.1568867802 - - PREDICTED: inorganic pyrophosphatase 3 [Jatropha curcas]
14 Hb_001396_200 0.1579292681 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
15 Hb_021596_030 0.1585166704 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
16 Hb_000002_340 0.1592865186 - - PREDICTED: peroxisomal bifunctional enzyme-like [Jatropha curcas]
17 Hb_000227_090 0.1613011553 - - PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Jatropha curcas]
18 Hb_002193_030 0.1624507378 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like [Jatropha curcas]
19 Hb_085868_010 0.1632481174 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
20 Hb_000907_110 0.1634632045 - - dihydroxyacetone kinase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_078494_010 Hb_078494_010 Hb_001017_050 Hb_001017_050 Hb_078494_010--Hb_001017_050 Hb_012633_040 Hb_012633_040 Hb_078494_010--Hb_012633_040 Hb_003494_200 Hb_003494_200 Hb_078494_010--Hb_003494_200 Hb_012035_050 Hb_012035_050 Hb_078494_010--Hb_012035_050 Hb_012506_050 Hb_012506_050 Hb_078494_010--Hb_012506_050 Hb_011716_070 Hb_011716_070 Hb_078494_010--Hb_011716_070 Hb_001017_050--Hb_012633_040 Hb_000296_070 Hb_000296_070 Hb_001017_050--Hb_000296_070 Hb_001017_050--Hb_011716_070 Hb_001017_050--Hb_012035_050 Hb_001017_050--Hb_003494_200 Hb_003465_030 Hb_003465_030 Hb_012633_040--Hb_003465_030 Hb_000907_110 Hb_000907_110 Hb_012633_040--Hb_000907_110 Hb_000181_400 Hb_000181_400 Hb_012633_040--Hb_000181_400 Hb_007416_120 Hb_007416_120 Hb_012633_040--Hb_007416_120 Hb_000170_070 Hb_000170_070 Hb_012633_040--Hb_000170_070 Hb_000749_190 Hb_000749_190 Hb_012633_040--Hb_000749_190 Hb_000130_410 Hb_000130_410 Hb_003494_200--Hb_000130_410 Hb_003494_200--Hb_000907_110 Hb_000220_220 Hb_000220_220 Hb_003494_200--Hb_000220_220 Hb_000680_160 Hb_000680_160 Hb_003494_200--Hb_000680_160 Hb_003294_070 Hb_003294_070 Hb_003494_200--Hb_003294_070 Hb_000015_040 Hb_000015_040 Hb_003494_200--Hb_000015_040 Hb_001579_220 Hb_001579_220 Hb_012035_050--Hb_001579_220 Hb_009558_030 Hb_009558_030 Hb_012035_050--Hb_009558_030 Hb_012035_050--Hb_000170_070 Hb_000111_420 Hb_000111_420 Hb_012035_050--Hb_000111_420 Hb_000329_470 Hb_000329_470 Hb_012035_050--Hb_000329_470 Hb_155159_030 Hb_155159_030 Hb_012035_050--Hb_155159_030 Hb_021596_030 Hb_021596_030 Hb_012506_050--Hb_021596_030 Hb_002217_510 Hb_002217_510 Hb_012506_050--Hb_002217_510 Hb_000462_170 Hb_000462_170 Hb_012506_050--Hb_000462_170 Hb_003376_330 Hb_003376_330 Hb_012506_050--Hb_003376_330 Hb_001269_610 Hb_001269_610 Hb_012506_050--Hb_001269_610 Hb_012506_050--Hb_000130_410 Hb_000221_250 Hb_000221_250 Hb_011716_070--Hb_000221_250 Hb_015175_050 Hb_015175_050 Hb_011716_070--Hb_015175_050 Hb_002344_060 Hb_002344_060 Hb_011716_070--Hb_002344_060 Hb_001860_030 Hb_001860_030 Hb_011716_070--Hb_001860_030 Hb_002400_410 Hb_002400_410 Hb_011716_070--Hb_002400_410 Hb_004324_130 Hb_004324_130 Hb_011716_070--Hb_004324_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.209894 0.521473 0.184021 0.324229 0.584062 0.407163
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.09985 0.378346 0.292932 0.634745 0.54173

CAGE analysis