Hb_075745_020

Information

Type -
Description -
Location Contig75745: 1233-2299
Sequence    

Annotation

kegg
ID pop:POPTR_0004s05040g
description POPTRDRAFT_713896; hypothetical protein
nr
ID XP_012091692.1
description PREDICTED: uncharacterized protein LOC105649606 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JE38
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21499 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_075745_020 0.0 - - PREDICTED: uncharacterized protein LOC105649606 isoform X1 [Jatropha curcas]
2 Hb_005332_020 0.0807084496 transcription factor TF Family: SNF2 dead box ATP-dependent RNA helicase, putative [Ricinus communis]
3 Hb_001799_050 0.0820342455 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
4 Hb_002701_150 0.0868411403 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
5 Hb_002045_150 0.0870573212 - - histone acetyltransferase gcn5, putative [Ricinus communis]
6 Hb_032202_110 0.087818284 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
7 Hb_000160_350 0.0882415047 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
8 Hb_000487_420 0.0887990477 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g04390 [Jatropha curcas]
9 Hb_140049_030 0.088867827 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
10 Hb_005965_030 0.0911759769 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
11 Hb_001545_200 0.0922507828 - - PREDICTED: uncharacterized oxidoreductase At4g09670 [Jatropha curcas]
12 Hb_008887_020 0.0928383357 - - PREDICTED: uncharacterized protein LOC105636191 [Jatropha curcas]
13 Hb_000679_340 0.0947882574 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
14 Hb_022256_060 0.0949608241 - - PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]
15 Hb_000963_130 0.0961133242 - - RNA m5u methyltransferase, putative [Ricinus communis]
16 Hb_000771_180 0.0964784647 - - polypyrimidine tract binding protein, putative [Ricinus communis]
17 Hb_000640_310 0.0974878084 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
18 Hb_003633_070 0.0976901474 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
19 Hb_000010_360 0.0982654027 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
20 Hb_111198_010 0.099991724 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_075745_020 Hb_075745_020 Hb_005332_020 Hb_005332_020 Hb_075745_020--Hb_005332_020 Hb_001799_050 Hb_001799_050 Hb_075745_020--Hb_001799_050 Hb_002701_150 Hb_002701_150 Hb_075745_020--Hb_002701_150 Hb_002045_150 Hb_002045_150 Hb_075745_020--Hb_002045_150 Hb_032202_110 Hb_032202_110 Hb_075745_020--Hb_032202_110 Hb_000160_350 Hb_000160_350 Hb_075745_020--Hb_000160_350 Hb_001953_150 Hb_001953_150 Hb_005332_020--Hb_001953_150 Hb_002422_050 Hb_002422_050 Hb_005332_020--Hb_002422_050 Hb_008887_020 Hb_008887_020 Hb_005332_020--Hb_008887_020 Hb_000152_260 Hb_000152_260 Hb_005332_020--Hb_000152_260 Hb_001143_250 Hb_001143_250 Hb_005332_020--Hb_001143_250 Hb_002374_260 Hb_002374_260 Hb_005332_020--Hb_002374_260 Hb_000640_310 Hb_000640_310 Hb_001799_050--Hb_000640_310 Hb_003633_070 Hb_003633_070 Hb_001799_050--Hb_003633_070 Hb_000264_030 Hb_000264_030 Hb_001799_050--Hb_000264_030 Hb_000556_170 Hb_000556_170 Hb_001799_050--Hb_000556_170 Hb_001799_050--Hb_000160_350 Hb_001799_050--Hb_001143_250 Hb_000236_470 Hb_000236_470 Hb_002701_150--Hb_000236_470 Hb_000836_410 Hb_000836_410 Hb_002701_150--Hb_000836_410 Hb_001636_050 Hb_001636_050 Hb_002701_150--Hb_001636_050 Hb_000679_340 Hb_000679_340 Hb_002701_150--Hb_000679_340 Hb_000230_090 Hb_000230_090 Hb_002701_150--Hb_000230_090 Hb_012565_050 Hb_012565_050 Hb_002701_150--Hb_012565_050 Hb_002157_260 Hb_002157_260 Hb_002045_150--Hb_002157_260 Hb_140049_030 Hb_140049_030 Hb_002045_150--Hb_140049_030 Hb_050847_020 Hb_050847_020 Hb_002045_150--Hb_050847_020 Hb_000771_180 Hb_000771_180 Hb_002045_150--Hb_000771_180 Hb_000300_360 Hb_000300_360 Hb_002045_150--Hb_000300_360 Hb_006452_160 Hb_006452_160 Hb_002045_150--Hb_006452_160 Hb_010738_010 Hb_010738_010 Hb_032202_110--Hb_010738_010 Hb_111198_010 Hb_111198_010 Hb_032202_110--Hb_111198_010 Hb_032202_110--Hb_000300_360 Hb_011386_040 Hb_011386_040 Hb_032202_110--Hb_011386_040 Hb_007982_070 Hb_007982_070 Hb_032202_110--Hb_007982_070 Hb_032202_110--Hb_000771_180 Hb_005965_030 Hb_005965_030 Hb_000160_350--Hb_005965_030 Hb_000160_350--Hb_000640_310 Hb_079526_030 Hb_079526_030 Hb_000160_350--Hb_079526_030 Hb_000160_350--Hb_000771_180 Hb_022256_060 Hb_022256_060 Hb_000160_350--Hb_022256_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.72807 3.65481 3.00994 0.952985 3.63619 3.91969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.09788 2.41692 1.34535 2.47444 1.83656

CAGE analysis