Hb_071130_050

Information

Type -
Description -
Location Contig71130: 89877-94361
Sequence    

Annotation

kegg
ID pop:POPTR_0001s37690g
description POPTRDRAFT_753283; hypothetical protein
nr
ID XP_012070994.1
description PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L456
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01022 PE=4 SV=1
Gene Ontology
ID GO:0006464
description intracellular protein transport protein uso1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55315: 89735-90772 , PASA_asmbl_55316: 93168-93570
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_071130_050 0.0 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
2 Hb_019654_050 0.128427475 - - PREDICTED: prolyl endopeptidase [Jatropha curcas]
3 Hb_000062_330 0.1338382549 - - unknown [Lotus japonicus]
4 Hb_002783_220 0.1405933298 - - PREDICTED: uncharacterized protein LOC105635342 isoform X1 [Jatropha curcas]
5 Hb_000244_170 0.1464480584 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
6 Hb_000987_040 0.1470308942 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X2 [Jatropha curcas]
7 Hb_000854_040 0.1509759448 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
8 Hb_003244_020 0.1528906304 - - PREDICTED: serine carboxypeptidase-like 27 [Jatropha curcas]
9 Hb_002205_140 0.1548599232 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
10 Hb_000765_060 0.1590863741 - - Alcohol dehydrogenase-like 6 [Glycine soja]
11 Hb_003001_090 0.1622965989 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
12 Hb_002676_120 0.1629947067 - - hypothetical protein POPTR_0002s23750g [Populus trichocarpa]
13 Hb_006570_160 0.1642900966 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
14 Hb_006775_120 0.1655016735 - - exonuclease-like protein [Oryza sativa Japonica Group]
15 Hb_002687_120 0.1665367661 - - PREDICTED: lipoyl synthase, chloroplastic [Jatropha curcas]
16 Hb_005333_060 0.1667293497 - - PREDICTED: uncharacterized protein LOC105630688 [Jatropha curcas]
17 Hb_000364_170 0.1670948494 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
18 Hb_000465_050 0.1673344614 - - PREDICTED: DNA mismatch repair protein MSH4 [Jatropha curcas]
19 Hb_007811_040 0.1693958679 - - PREDICTED: trafficking protein particle complex subunit 4 isoform X1 [Gossypium raimondii]
20 Hb_000035_080 0.1697606298 - - PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]

Gene co-expression network

sample Hb_071130_050 Hb_071130_050 Hb_019654_050 Hb_019654_050 Hb_071130_050--Hb_019654_050 Hb_000062_330 Hb_000062_330 Hb_071130_050--Hb_000062_330 Hb_002783_220 Hb_002783_220 Hb_071130_050--Hb_002783_220 Hb_000244_170 Hb_000244_170 Hb_071130_050--Hb_000244_170 Hb_000987_040 Hb_000987_040 Hb_071130_050--Hb_000987_040 Hb_000854_040 Hb_000854_040 Hb_071130_050--Hb_000854_040 Hb_001799_160 Hb_001799_160 Hb_019654_050--Hb_001799_160 Hb_000120_890 Hb_000120_890 Hb_019654_050--Hb_000120_890 Hb_003835_110 Hb_003835_110 Hb_019654_050--Hb_003835_110 Hb_003498_100 Hb_003498_100 Hb_019654_050--Hb_003498_100 Hb_011381_040 Hb_011381_040 Hb_019654_050--Hb_011381_040 Hb_019654_050--Hb_002783_220 Hb_000062_330--Hb_000244_170 Hb_007811_040 Hb_007811_040 Hb_000062_330--Hb_007811_040 Hb_002687_120 Hb_002687_120 Hb_000062_330--Hb_002687_120 Hb_000832_190 Hb_000832_190 Hb_000062_330--Hb_000832_190 Hb_000890_130 Hb_000890_130 Hb_000062_330--Hb_000890_130 Hb_001195_060 Hb_001195_060 Hb_000062_330--Hb_001195_060 Hb_006775_120 Hb_006775_120 Hb_002783_220--Hb_006775_120 Hb_000364_170 Hb_000364_170 Hb_002783_220--Hb_000364_170 Hb_000000_330 Hb_000000_330 Hb_002783_220--Hb_000000_330 Hb_005333_060 Hb_005333_060 Hb_002783_220--Hb_005333_060 Hb_002783_220--Hb_000987_040 Hb_003244_020 Hb_003244_020 Hb_000244_170--Hb_003244_020 Hb_013394_050 Hb_013394_050 Hb_000244_170--Hb_013394_050 Hb_007894_010 Hb_007894_010 Hb_000244_170--Hb_007894_010 Hb_002184_090 Hb_002184_090 Hb_000244_170--Hb_002184_090 Hb_000197_020 Hb_000197_020 Hb_000244_170--Hb_000197_020 Hb_002676_120 Hb_002676_120 Hb_000987_040--Hb_002676_120 Hb_000987_040--Hb_005333_060 Hb_005754_040 Hb_005754_040 Hb_000987_040--Hb_005754_040 Hb_001633_200 Hb_001633_200 Hb_000987_040--Hb_001633_200 Hb_004125_010 Hb_004125_010 Hb_000987_040--Hb_004125_010 Hb_001252_090 Hb_001252_090 Hb_000854_040--Hb_001252_090 Hb_003777_200 Hb_003777_200 Hb_000854_040--Hb_003777_200 Hb_000317_040 Hb_000317_040 Hb_000854_040--Hb_000317_040 Hb_000854_040--Hb_001633_200 Hb_001454_230 Hb_001454_230 Hb_000854_040--Hb_001454_230 Hb_000748_030 Hb_000748_030 Hb_000854_040--Hb_000748_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.332089 0.258487 2.57993 1.942 0.745933 0.358966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.508103 0.599699 1.55021 1.03333 0.70526

CAGE analysis