Hb_067197_030

Information

Type -
Description -
Location Contig67197: 4508-5242
Sequence    

Annotation

kegg
ID rcu:RCOM_1615110
description hypothetical protein
nr
ID XP_012083409.1
description PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
swissprot
ID Q9M2D2
description UPF0187 protein At3g61320, chloroplastic OS=Arabidopsis thaliana GN=At3g61320 PE=2 SV=2
trembl
ID A0A067K8P6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14411 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_067197_030 0.0 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
2 Hb_000390_020 0.1675546681 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 4-like [Jatropha curcas]
3 Hb_012787_030 0.1887820162 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
4 Hb_003090_150 0.194938855 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
5 Hb_003529_180 0.1955965526 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
6 Hb_002030_110 0.1991663408 - - PREDICTED: RING-H2 finger protein ATL32-like [Jatropha curcas]
7 Hb_011609_010 0.2013292688 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
8 Hb_001571_030 0.2043133924 - - PREDICTED: uncharacterized protein LOC105640040 isoform X1 [Jatropha curcas]
9 Hb_015026_040 0.2054266185 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
10 Hb_005394_010 0.2054850167 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
11 Hb_003605_120 0.2060640222 - - hypothetical protein POPTR_0013s12060g [Populus trichocarpa]
12 Hb_003119_050 0.2068816032 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
13 Hb_001894_160 0.2073990558 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001621_110 0.209672832 - - PREDICTED: uncharacterized protein LOC105647362 [Jatropha curcas]
15 Hb_005548_030 0.2107494422 - - hypothetical protein JCGZ_05606 [Jatropha curcas]
16 Hb_032202_050 0.2110577528 transcription factor TF Family: TCP conserved hypothetical protein [Ricinus communis]
17 Hb_003747_050 0.2143615687 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
18 Hb_006935_040 0.2148814546 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
19 Hb_001414_050 0.215286591 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
20 Hb_000008_390 0.2163227063 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]

Gene co-expression network

sample Hb_067197_030 Hb_067197_030 Hb_000390_020 Hb_000390_020 Hb_067197_030--Hb_000390_020 Hb_012787_030 Hb_012787_030 Hb_067197_030--Hb_012787_030 Hb_003090_150 Hb_003090_150 Hb_067197_030--Hb_003090_150 Hb_003529_180 Hb_003529_180 Hb_067197_030--Hb_003529_180 Hb_002030_110 Hb_002030_110 Hb_067197_030--Hb_002030_110 Hb_011609_010 Hb_011609_010 Hb_067197_030--Hb_011609_010 Hb_000120_350 Hb_000120_350 Hb_000390_020--Hb_000120_350 Hb_001414_050 Hb_001414_050 Hb_000390_020--Hb_001414_050 Hb_000008_390 Hb_000008_390 Hb_000390_020--Hb_000008_390 Hb_000300_710 Hb_000300_710 Hb_000390_020--Hb_000300_710 Hb_006935_040 Hb_006935_040 Hb_000390_020--Hb_006935_040 Hb_000390_020--Hb_011609_010 Hb_015026_020 Hb_015026_020 Hb_012787_030--Hb_015026_020 Hb_001894_160 Hb_001894_160 Hb_012787_030--Hb_001894_160 Hb_000928_250 Hb_000928_250 Hb_012787_030--Hb_000928_250 Hb_003106_200 Hb_003106_200 Hb_012787_030--Hb_003106_200 Hb_003747_050 Hb_003747_050 Hb_012787_030--Hb_003747_050 Hb_011671_110 Hb_011671_110 Hb_012787_030--Hb_011671_110 Hb_000671_060 Hb_000671_060 Hb_003090_150--Hb_000671_060 Hb_001571_030 Hb_001571_030 Hb_003090_150--Hb_001571_030 Hb_003090_150--Hb_002030_110 Hb_003090_150--Hb_001894_160 Hb_003090_150--Hb_011671_110 Hb_033930_010 Hb_033930_010 Hb_003090_150--Hb_033930_010 Hb_002600_130 Hb_002600_130 Hb_003529_180--Hb_002600_130 Hb_000732_030 Hb_000732_030 Hb_003529_180--Hb_000732_030 Hb_003529_180--Hb_011609_010 Hb_004725_030 Hb_004725_030 Hb_003529_180--Hb_004725_030 Hb_000009_220 Hb_000009_220 Hb_003529_180--Hb_000009_220 Hb_000189_390 Hb_000189_390 Hb_003529_180--Hb_000189_390 Hb_001863_340 Hb_001863_340 Hb_002030_110--Hb_001863_340 Hb_002030_110--Hb_001894_160 Hb_000622_210 Hb_000622_210 Hb_002030_110--Hb_000622_210 Hb_002030_110--Hb_033930_010 Hb_000680_180 Hb_000680_180 Hb_002030_110--Hb_000680_180 Hb_000803_090 Hb_000803_090 Hb_011609_010--Hb_000803_090 Hb_001624_040 Hb_001624_040 Hb_011609_010--Hb_001624_040 Hb_011609_010--Hb_000008_390 Hb_001621_110 Hb_001621_110 Hb_011609_010--Hb_001621_110 Hb_000062_360 Hb_000062_360 Hb_011609_010--Hb_000062_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.575904 1.05 1.58352 0.776701 0.349464 0.145301
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.118938 0.106681 0.024147 0.354902

CAGE analysis