Hb_056506_060

Information

Type -
Description -
Location Contig56506: 37866-38165
Sequence    

Annotation

kegg
ID mdm:103430571
description sodium/hydrogen exchanger 1-like
nr
ID KJB45177.1
description hypothetical protein B456_007G294000 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2PGK3
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G294000 PE=4 SV=1
Gene Ontology
ID GO:0005774
description sodium hydrogen exchanger 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_056506_060 0.0 - - hypothetical protein B456_007G294000 [Gossypium raimondii]
2 Hb_002151_080 0.2139010362 - - hypothetical protein MIMGU_mgv1a000572mg [Erythranthe guttata]
3 Hb_003978_010 0.2227902347 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
4 Hb_145979_010 0.2269134453 - - PREDICTED: uncharacterized protein LOC105172316 [Sesamum indicum]
5 Hb_000828_040 0.243940298 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
6 Hb_004096_080 0.2509489069 - - PREDICTED: IST1 homolog [Jatropha curcas]
7 Hb_039894_010 0.2548848863 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_002273_060 0.2555562485 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000230_040 0.2568853832 - - PREDICTED: protein MON2 homolog isoform X2 [Vitis vinifera]
10 Hb_004136_040 0.2618207745 - - putative protein kinase [Arabidopsis thaliana]
11 Hb_004453_040 0.264311581 - - PREDICTED: UPF0481 protein At3g47200-like [Pyrus x bretschneideri]
12 Hb_000087_050 0.2671106789 - - hypothetical protein JCGZ_16227 [Jatropha curcas]
13 Hb_003206_030 0.2679206359 - - PREDICTED: uncharacterized protein LOC105632652 [Jatropha curcas]
14 Hb_005657_020 0.2681674792 - - -
15 Hb_002400_400 0.2703606143 - - PREDICTED: topless-related protein 1-like isoform X3 [Jatropha curcas]
16 Hb_111198_020 0.2714806852 - - hypothetical protein JCGZ_06907 [Jatropha curcas]
17 Hb_089497_010 0.2730002188 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]
18 Hb_084429_010 0.2788425335 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Populus euphratica]
19 Hb_000236_080 0.2802383503 - - PREDICTED: small subunit processome component 20 homolog [Jatropha curcas]
20 Hb_005375_040 0.2808533376 - - dicer-1, putative [Ricinus communis]

Gene co-expression network

sample Hb_056506_060 Hb_056506_060 Hb_002151_080 Hb_002151_080 Hb_056506_060--Hb_002151_080 Hb_003978_010 Hb_003978_010 Hb_056506_060--Hb_003978_010 Hb_145979_010 Hb_145979_010 Hb_056506_060--Hb_145979_010 Hb_000828_040 Hb_000828_040 Hb_056506_060--Hb_000828_040 Hb_004096_080 Hb_004096_080 Hb_056506_060--Hb_004096_080 Hb_039894_010 Hb_039894_010 Hb_056506_060--Hb_039894_010 Hb_000230_040 Hb_000230_040 Hb_002151_080--Hb_000230_040 Hb_000032_060 Hb_000032_060 Hb_002151_080--Hb_000032_060 Hb_000088_020 Hb_000088_020 Hb_002151_080--Hb_000088_020 Hb_000523_090 Hb_000523_090 Hb_002151_080--Hb_000523_090 Hb_000181_180 Hb_000181_180 Hb_002151_080--Hb_000181_180 Hb_003061_010 Hb_003061_010 Hb_002151_080--Hb_003061_010 Hb_011472_040 Hb_011472_040 Hb_003978_010--Hb_011472_040 Hb_007849_040 Hb_007849_040 Hb_003978_010--Hb_007849_040 Hb_001975_070 Hb_001975_070 Hb_003978_010--Hb_001975_070 Hb_004225_180 Hb_004225_180 Hb_003978_010--Hb_004225_180 Hb_001195_100 Hb_001195_100 Hb_003978_010--Hb_001195_100 Hb_010407_070 Hb_010407_070 Hb_003978_010--Hb_010407_070 Hb_000087_050 Hb_000087_050 Hb_145979_010--Hb_000087_050 Hb_000016_100 Hb_000016_100 Hb_145979_010--Hb_000016_100 Hb_010727_010 Hb_010727_010 Hb_145979_010--Hb_010727_010 Hb_000923_050 Hb_000923_050 Hb_145979_010--Hb_000923_050 Hb_001477_130 Hb_001477_130 Hb_145979_010--Hb_001477_130 Hb_001016_110 Hb_001016_110 Hb_145979_010--Hb_001016_110 Hb_000009_620 Hb_000009_620 Hb_000828_040--Hb_000009_620 Hb_001507_100 Hb_001507_100 Hb_000828_040--Hb_001507_100 Hb_000640_300 Hb_000640_300 Hb_000828_040--Hb_000640_300 Hb_003160_020 Hb_003160_020 Hb_000828_040--Hb_003160_020 Hb_028872_060 Hb_028872_060 Hb_000828_040--Hb_028872_060 Hb_001150_040 Hb_001150_040 Hb_000828_040--Hb_001150_040 Hb_001396_260 Hb_001396_260 Hb_004096_080--Hb_001396_260 Hb_084429_010 Hb_084429_010 Hb_004096_080--Hb_084429_010 Hb_015763_020 Hb_015763_020 Hb_004096_080--Hb_015763_020 Hb_002078_420 Hb_002078_420 Hb_004096_080--Hb_002078_420 Hb_114310_040 Hb_114310_040 Hb_004096_080--Hb_114310_040 Hb_011861_070 Hb_011861_070 Hb_004096_080--Hb_011861_070 Hb_000115_310 Hb_000115_310 Hb_039894_010--Hb_000115_310 Hb_039894_010--Hb_015763_020 Hb_000445_300 Hb_000445_300 Hb_039894_010--Hb_000445_300 Hb_001009_290 Hb_001009_290 Hb_039894_010--Hb_001009_290 Hb_004136_040 Hb_004136_040 Hb_039894_010--Hb_004136_040 Hb_004920_130 Hb_004920_130 Hb_039894_010--Hb_004920_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.89052 1.45931 0 0 0.932876 2.04049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.12288 1.17932 0 1.91581 0.455233

CAGE analysis