Hb_053281_010

Information

Type -
Description -
Location Contig53281: 18-551
Sequence    

Annotation

kegg
ID tcc:TCM_046937
description Coiled-coil domain-containing protein 109A isoform 1
nr
ID XP_012077665.1
description PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
swissprot
ID F4I111
description Calcium uniporter protein 6, mitochondrial OS=Arabidopsis thaliana GN=At1g09575 PE=2 SV=1
trembl
ID A0A067LML8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17266 PE=4 SV=1
Gene Ontology
ID GO:0016021
description calcium uniporter protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_053281_010 0.0 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
2 Hb_010020_010 0.3009719443 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
3 Hb_001534_110 0.3155114537 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003676_030 0.3319209685 - - PREDICTED: cyclin-L1-1-like [Populus euphratica]
5 Hb_158253_010 0.3349075136 - - -
6 Hb_000260_370 0.3359332627 - - protein phosphatase-1, putative [Ricinus communis]
7 Hb_006721_070 0.3361662351 - - PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Jatropha curcas]
8 Hb_023001_070 0.3390536957 - - PREDICTED: dnaJ protein ERDJ3A-like [Eucalyptus grandis]
9 Hb_003605_120 0.3408522331 - - hypothetical protein POPTR_0013s12060g [Populus trichocarpa]
10 Hb_000264_230 0.3458408212 - - PREDICTED: uncharacterized protein LOC105649528 [Jatropha curcas]
11 Hb_000487_190 0.347073638 - - -
12 Hb_020094_020 0.3536020196 - - PREDICTED: 17.1 kDa class II heat shock protein-like [Pyrus x bretschneideri]
13 Hb_000062_110 0.3564053223 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
14 Hb_004296_010 0.3580641139 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
15 Hb_152540_010 0.3602691167 - - -
16 Hb_002988_030 0.3613280495 - - hypothetical protein EUGRSUZ_K02073 [Eucalyptus grandis]
17 Hb_040290_010 0.361684346 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
18 Hb_002150_110 0.3624756775 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
19 Hb_003096_020 0.3628110653 - - -
20 Hb_021254_010 0.3632324833 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]

Gene co-expression network

sample Hb_053281_010 Hb_053281_010 Hb_010020_010 Hb_010020_010 Hb_053281_010--Hb_010020_010 Hb_001534_110 Hb_001534_110 Hb_053281_010--Hb_001534_110 Hb_003676_030 Hb_003676_030 Hb_053281_010--Hb_003676_030 Hb_158253_010 Hb_158253_010 Hb_053281_010--Hb_158253_010 Hb_000260_370 Hb_000260_370 Hb_053281_010--Hb_000260_370 Hb_006721_070 Hb_006721_070 Hb_053281_010--Hb_006721_070 Hb_020094_020 Hb_020094_020 Hb_010020_010--Hb_020094_020 Hb_000062_110 Hb_000062_110 Hb_010020_010--Hb_000062_110 Hb_004296_010 Hb_004296_010 Hb_010020_010--Hb_004296_010 Hb_001369_370 Hb_001369_370 Hb_010020_010--Hb_001369_370 Hb_010174_210 Hb_010174_210 Hb_010020_010--Hb_010174_210 Hb_010407_190 Hb_010407_190 Hb_010020_010--Hb_010407_190 Hb_003605_120 Hb_003605_120 Hb_001534_110--Hb_003605_120 Hb_001864_080 Hb_001864_080 Hb_001534_110--Hb_001864_080 Hb_000808_110 Hb_000808_110 Hb_001534_110--Hb_000808_110 Hb_005479_010 Hb_005479_010 Hb_001534_110--Hb_005479_010 Hb_000116_400 Hb_000116_400 Hb_001534_110--Hb_000116_400 Hb_001864_070 Hb_001864_070 Hb_003676_030--Hb_001864_070 Hb_002893_040 Hb_002893_040 Hb_003676_030--Hb_002893_040 Hb_000136_030 Hb_000136_030 Hb_003676_030--Hb_000136_030 Hb_001839_020 Hb_001839_020 Hb_003676_030--Hb_001839_020 Hb_005389_100 Hb_005389_100 Hb_003676_030--Hb_005389_100 Hb_004648_090 Hb_004648_090 Hb_003676_030--Hb_004648_090 Hb_004048_140 Hb_004048_140 Hb_158253_010--Hb_004048_140 Hb_001195_570 Hb_001195_570 Hb_158253_010--Hb_001195_570 Hb_036227_010 Hb_036227_010 Hb_158253_010--Hb_036227_010 Hb_000529_210 Hb_000529_210 Hb_158253_010--Hb_000529_210 Hb_000107_170 Hb_000107_170 Hb_158253_010--Hb_000107_170 Hb_000014_170 Hb_000014_170 Hb_158253_010--Hb_000014_170 Hb_002965_030 Hb_002965_030 Hb_000260_370--Hb_002965_030 Hb_000260_370--Hb_004296_010 Hb_002999_060 Hb_002999_060 Hb_000260_370--Hb_002999_060 Hb_000422_110 Hb_000422_110 Hb_000260_370--Hb_000422_110 Hb_006618_040 Hb_006618_040 Hb_000260_370--Hb_006618_040 Hb_013394_060 Hb_013394_060 Hb_000260_370--Hb_013394_060 Hb_000991_050 Hb_000991_050 Hb_006721_070--Hb_000991_050 Hb_021254_010 Hb_021254_010 Hb_006721_070--Hb_021254_010 Hb_000302_300 Hb_000302_300 Hb_006721_070--Hb_000302_300 Hb_006573_010 Hb_006573_010 Hb_006721_070--Hb_006573_010 Hb_000997_150 Hb_000997_150 Hb_006721_070--Hb_000997_150 Hb_006721_070--Hb_004296_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.221196 0.355093 0.161167 0.110261 0.444693 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.284553 0 0 0.359572

CAGE analysis