Hb_158253_010

Information

Type -
Description -
Location Contig158253: 1-392
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158253_010 0.0 - - -
2 Hb_004048_140 0.2208160991 - - -
3 Hb_001195_570 0.2301050082 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
4 Hb_036227_010 0.2331428649 - - -
5 Hb_000529_210 0.2361316911 - - PREDICTED: uncharacterized protein At4g38062 [Jatropha curcas]
6 Hb_000107_170 0.2393501253 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
7 Hb_000014_170 0.2425520129 - - hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]
8 Hb_007778_020 0.2516268968 - - -
9 Hb_018599_010 0.2524074429 - - PREDICTED: uncharacterized protein LOC105640954 [Jatropha curcas]
10 Hb_002374_280 0.2540871722 - - -
11 Hb_007123_070 0.2545510973 - - -
12 Hb_004976_020 0.2551896859 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
13 Hb_000948_180 0.2558514027 - - PREDICTED: uncharacterized protein LOC105629501 [Jatropha curcas]
14 Hb_001504_070 0.2560570848 - - PREDICTED: 60S ribosomal protein L7-1 [Jatropha curcas]
15 Hb_140616_020 0.256267247 - - -
16 Hb_008078_030 0.2563906974 - - -
17 Hb_007007_050 0.257910921 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
18 Hb_020730_010 0.2593060282 - - hypothetical protein CICLE_v10010243mg, partial [Citrus clementina]
19 Hb_014720_170 0.2594367254 - - glutaredoxin-1, grx1, putative [Ricinus communis]
20 Hb_000390_130 0.2607234756 - - PREDICTED: dnaJ protein ERDJ3B isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_158253_010 Hb_158253_010 Hb_004048_140 Hb_004048_140 Hb_158253_010--Hb_004048_140 Hb_001195_570 Hb_001195_570 Hb_158253_010--Hb_001195_570 Hb_036227_010 Hb_036227_010 Hb_158253_010--Hb_036227_010 Hb_000529_210 Hb_000529_210 Hb_158253_010--Hb_000529_210 Hb_000107_170 Hb_000107_170 Hb_158253_010--Hb_000107_170 Hb_000014_170 Hb_000014_170 Hb_158253_010--Hb_000014_170 Hb_007017_060 Hb_007017_060 Hb_004048_140--Hb_007017_060 Hb_017417_010 Hb_017417_010 Hb_004048_140--Hb_017417_010 Hb_009801_010 Hb_009801_010 Hb_004048_140--Hb_009801_010 Hb_001473_190 Hb_001473_190 Hb_004048_140--Hb_001473_190 Hb_004324_020 Hb_004324_020 Hb_004048_140--Hb_004324_020 Hb_107847_010 Hb_107847_010 Hb_004048_140--Hb_107847_010 Hb_033095_020 Hb_033095_020 Hb_001195_570--Hb_033095_020 Hb_001168_040 Hb_001168_040 Hb_001195_570--Hb_001168_040 Hb_011512_080 Hb_011512_080 Hb_001195_570--Hb_011512_080 Hb_001288_080 Hb_001288_080 Hb_001195_570--Hb_001288_080 Hb_001135_020 Hb_001135_020 Hb_001195_570--Hb_001135_020 Hb_054865_090 Hb_054865_090 Hb_001195_570--Hb_054865_090 Hb_000504_170 Hb_000504_170 Hb_036227_010--Hb_000504_170 Hb_007778_020 Hb_007778_020 Hb_036227_010--Hb_007778_020 Hb_036227_010--Hb_107847_010 Hb_000258_320 Hb_000258_320 Hb_036227_010--Hb_000258_320 Hb_020730_010 Hb_020730_010 Hb_036227_010--Hb_020730_010 Hb_014720_170 Hb_014720_170 Hb_036227_010--Hb_014720_170 Hb_000529_210--Hb_001195_570 Hb_004785_190 Hb_004785_190 Hb_000529_210--Hb_004785_190 Hb_007123_070 Hb_007123_070 Hb_000529_210--Hb_007123_070 Hb_000175_090 Hb_000175_090 Hb_000529_210--Hb_000175_090 Hb_092337_020 Hb_092337_020 Hb_000529_210--Hb_092337_020 Hb_000152_230 Hb_000152_230 Hb_000529_210--Hb_000152_230 Hb_003091_010 Hb_003091_010 Hb_000107_170--Hb_003091_010 Hb_000359_330 Hb_000359_330 Hb_000107_170--Hb_000359_330 Hb_001474_030 Hb_001474_030 Hb_000107_170--Hb_001474_030 Hb_000107_170--Hb_000014_170 Hb_000617_220 Hb_000617_220 Hb_000107_170--Hb_000617_220 Hb_001754_170 Hb_001754_170 Hb_000107_170--Hb_001754_170 Hb_003142_070 Hb_003142_070 Hb_000014_170--Hb_003142_070 Hb_001352_090 Hb_001352_090 Hb_000014_170--Hb_001352_090 Hb_006623_020 Hb_006623_020 Hb_000014_170--Hb_006623_020 Hb_000014_170--Hb_003091_010 Hb_000072_140 Hb_000072_140 Hb_000014_170--Hb_000072_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.79357 0.729562 0.453863 0.545501 1.37826 0.496038
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.408393 1.2879 0 0 0.487126

CAGE analysis