Hb_040255_010

Information

Type -
Description -
Location Contig40255: 5077-5565
Sequence    

Annotation

kegg
ID vvi:104878334
description pentatricopeptide repeat-containing protein At5g66520-like
nr
ID KDP36387.1
description hypothetical protein JCGZ_08656 [Jatropha curcas]
swissprot
ID Q9C866
description Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
trembl
ID A0A067KJT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08656 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_040255_010 0.0 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
2 Hb_003157_010 0.1327244863 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
3 Hb_000808_070 0.1376901958 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
4 Hb_000189_100 0.140572879 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
5 Hb_018133_030 0.1499815424 - - Heme-binding protein, putative [Ricinus communis]
6 Hb_007904_080 0.1523768042 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
7 Hb_002762_130 0.1566021107 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
8 Hb_006663_040 0.1571803545 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
9 Hb_141547_010 0.1572140216 - - PREDICTED: ARF guanine-nucleotide exchange factor GNOM [Jatropha curcas]
10 Hb_000032_310 0.1573276212 - - ring finger protein, putative [Ricinus communis]
11 Hb_000327_280 0.1580283046 - - PREDICTED: uncharacterized protein LOC105635045 isoform X1 [Jatropha curcas]
12 Hb_000080_170 0.1589295488 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
13 Hb_000832_320 0.1606732 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
14 Hb_057451_010 0.1621469137 - - PREDICTED: uncharacterized protein LOC105635588 [Jatropha curcas]
15 Hb_144824_010 0.1628867295 - - hypothetical protein POPTR_0019s02110g [Populus trichocarpa]
16 Hb_001989_020 0.1638519307 - - hypothetical protein JCGZ_15521 [Jatropha curcas]
17 Hb_000465_480 0.1676309697 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16835, mitochondrial [Jatropha curcas]
18 Hb_000932_070 0.1680056705 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
19 Hb_026198_040 0.1694811714 - - PREDICTED: uncharacterized protein LOC105628901 [Jatropha curcas]
20 Hb_000162_020 0.1697304735 - - protein translocase, putative [Ricinus communis]

Gene co-expression network

sample Hb_040255_010 Hb_040255_010 Hb_003157_010 Hb_003157_010 Hb_040255_010--Hb_003157_010 Hb_000808_070 Hb_000808_070 Hb_040255_010--Hb_000808_070 Hb_000189_100 Hb_000189_100 Hb_040255_010--Hb_000189_100 Hb_018133_030 Hb_018133_030 Hb_040255_010--Hb_018133_030 Hb_007904_080 Hb_007904_080 Hb_040255_010--Hb_007904_080 Hb_002762_130 Hb_002762_130 Hb_040255_010--Hb_002762_130 Hb_057451_010 Hb_057451_010 Hb_003157_010--Hb_057451_010 Hb_006501_020 Hb_006501_020 Hb_003157_010--Hb_006501_020 Hb_003157_010--Hb_000808_070 Hb_009028_030 Hb_009028_030 Hb_003157_010--Hb_009028_030 Hb_000640_200 Hb_000640_200 Hb_003157_010--Hb_000640_200 Hb_001989_020 Hb_001989_020 Hb_003157_010--Hb_001989_020 Hb_001301_230 Hb_001301_230 Hb_000808_070--Hb_001301_230 Hb_000808_070--Hb_006501_020 Hb_000808_070--Hb_018133_030 Hb_007257_050 Hb_007257_050 Hb_000808_070--Hb_007257_050 Hb_000932_070 Hb_000932_070 Hb_000808_070--Hb_000932_070 Hb_006663_040 Hb_006663_040 Hb_000189_100--Hb_006663_040 Hb_000327_280 Hb_000327_280 Hb_000189_100--Hb_000327_280 Hb_018133_050 Hb_018133_050 Hb_000189_100--Hb_018133_050 Hb_000832_320 Hb_000832_320 Hb_000189_100--Hb_000832_320 Hb_052764_060 Hb_052764_060 Hb_000189_100--Hb_052764_060 Hb_000061_510 Hb_000061_510 Hb_000189_100--Hb_000061_510 Hb_018133_030--Hb_009028_030 Hb_018133_030--Hb_057451_010 Hb_004449_050 Hb_004449_050 Hb_018133_030--Hb_004449_050 Hb_030827_060 Hb_030827_060 Hb_018133_030--Hb_030827_060 Hb_164010_070 Hb_164010_070 Hb_018133_030--Hb_164010_070 Hb_141547_010 Hb_141547_010 Hb_007904_080--Hb_141547_010 Hb_000342_090 Hb_000342_090 Hb_007904_080--Hb_000342_090 Hb_111985_080 Hb_111985_080 Hb_007904_080--Hb_111985_080 Hb_002105_080 Hb_002105_080 Hb_007904_080--Hb_002105_080 Hb_006816_300 Hb_006816_300 Hb_007904_080--Hb_006816_300 Hb_007849_020 Hb_007849_020 Hb_007904_080--Hb_007849_020 Hb_000162_020 Hb_000162_020 Hb_002762_130--Hb_000162_020 Hb_002762_130--Hb_018133_050 Hb_034243_020 Hb_034243_020 Hb_002762_130--Hb_034243_020 Hb_000997_030 Hb_000997_030 Hb_002762_130--Hb_000997_030 Hb_133047_010 Hb_133047_010 Hb_002762_130--Hb_133047_010 Hb_001493_040 Hb_001493_040 Hb_002762_130--Hb_001493_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.23161 4.42976 0.470468 0.573898 1.7811 2.71599
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.139242 0.218771 1.29114 1.36713 0.813842

CAGE analysis