Hb_025595_010

Information

Type -
Description -
Location Contig25595: 530-979
Sequence    

Annotation

kegg
ID cit:102627096
description TMV resistance protein N-like
nr
ID KDP28980.1
description hypothetical protein JCGZ_19531 [Jatropha curcas]
swissprot
ID Q9RBS2
description Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2
trembl
ID A0A067K9L2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19531 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025595_010 0.0 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
2 Hb_000438_150 0.2243099067 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 7 [Jatropha curcas]
3 Hb_048944_020 0.2392269971 - - hypothetical protein POPTR_0014s002002g, partial [Populus trichocarpa]
4 Hb_003813_080 0.2500761436 - - PREDICTED: uncharacterized protein LOC105133003 [Populus euphratica]
5 Hb_009476_150 0.2552597097 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
6 Hb_003531_040 0.2568853359 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
7 Hb_000960_020 0.2671959809 - - -
8 Hb_001357_280 0.2683658611 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
9 Hb_003544_040 0.269744552 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
10 Hb_144547_010 0.2711074335 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
11 Hb_035761_010 0.2733195108 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
12 Hb_161994_040 0.274824014 - - -
13 Hb_127404_010 0.2764117594 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X1 [Gossypium raimondii]
14 Hb_009102_020 0.2773692775 - - hypothetical protein EUGRSUZ_I01262 [Eucalyptus grandis]
15 Hb_003906_030 0.2816238391 - - mads box protein, putative [Ricinus communis]
16 Hb_000936_040 0.28319123 - - hypothetical protein JCGZ_00046 [Jatropha curcas]
17 Hb_000242_020 0.2837637129 - - hypothetical protein CICLE_v100246891mg, partial [Citrus clementina]
18 Hb_007545_200 0.2896593504 - - Pectinesterase-3 precursor, putative [Ricinus communis]
19 Hb_000099_190 0.2901668703 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
20 Hb_017434_070 0.2915240286 - - transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_025595_010 Hb_025595_010 Hb_000438_150 Hb_000438_150 Hb_025595_010--Hb_000438_150 Hb_048944_020 Hb_048944_020 Hb_025595_010--Hb_048944_020 Hb_003813_080 Hb_003813_080 Hb_025595_010--Hb_003813_080 Hb_009476_150 Hb_009476_150 Hb_025595_010--Hb_009476_150 Hb_003531_040 Hb_003531_040 Hb_025595_010--Hb_003531_040 Hb_000960_020 Hb_000960_020 Hb_025595_010--Hb_000960_020 Hb_000438_150--Hb_009476_150 Hb_000099_190 Hb_000099_190 Hb_000438_150--Hb_000099_190 Hb_000732_240 Hb_000732_240 Hb_000438_150--Hb_000732_240 Hb_000438_150--Hb_048944_020 Hb_002196_010 Hb_002196_010 Hb_000438_150--Hb_002196_010 Hb_007157_060 Hb_007157_060 Hb_000438_150--Hb_007157_060 Hb_101370_010 Hb_101370_010 Hb_048944_020--Hb_101370_010 Hb_035761_010 Hb_035761_010 Hb_048944_020--Hb_035761_010 Hb_005056_100 Hb_005056_100 Hb_048944_020--Hb_005056_100 Hb_048944_020--Hb_000099_190 Hb_000189_070 Hb_000189_070 Hb_048944_020--Hb_000189_070 Hb_040747_010 Hb_040747_010 Hb_003813_080--Hb_040747_010 Hb_013358_100 Hb_013358_100 Hb_003813_080--Hb_013358_100 Hb_000479_290 Hb_000479_290 Hb_003813_080--Hb_000479_290 Hb_003673_050 Hb_003673_050 Hb_003813_080--Hb_003673_050 Hb_154538_010 Hb_154538_010 Hb_003813_080--Hb_154538_010 Hb_000242_030 Hb_000242_030 Hb_003813_080--Hb_000242_030 Hb_012258_020 Hb_012258_020 Hb_009476_150--Hb_012258_020 Hb_002233_070 Hb_002233_070 Hb_009476_150--Hb_002233_070 Hb_001357_280 Hb_001357_280 Hb_009476_150--Hb_001357_280 Hb_006286_010 Hb_006286_010 Hb_009476_150--Hb_006286_010 Hb_009476_150--Hb_000732_240 Hb_003913_030 Hb_003913_030 Hb_003531_040--Hb_003913_030 Hb_006916_200 Hb_006916_200 Hb_003531_040--Hb_006916_200 Hb_020967_010 Hb_020967_010 Hb_003531_040--Hb_020967_010 Hb_005714_100 Hb_005714_100 Hb_003531_040--Hb_005714_100 Hb_011689_100 Hb_011689_100 Hb_003531_040--Hb_011689_100 Hb_002875_070 Hb_002875_070 Hb_003531_040--Hb_002875_070 Hb_003906_030 Hb_003906_030 Hb_000960_020--Hb_003906_030 Hb_008092_030 Hb_008092_030 Hb_000960_020--Hb_008092_030 Hb_091336_010 Hb_091336_010 Hb_000960_020--Hb_091336_010 Hb_178711_010 Hb_178711_010 Hb_000960_020--Hb_178711_010 Hb_022534_010 Hb_022534_010 Hb_000960_020--Hb_022534_010 Hb_000304_040 Hb_000304_040 Hb_000960_020--Hb_000304_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.448612 0.698745 0.219194 0.96674 0 0.15238
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.160516 0 0 0.106048 0

CAGE analysis