Hb_003813_080

Information

Type -
Description -
Location Contig3813: 52454-53182
Sequence    

Annotation

kegg
ID pop:POPTR_0004s09790g
description POPTRDRAFT_800529; hypothetical protein
nr
ID XP_011035078.1
description PREDICTED: uncharacterized protein LOC105133003 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9H306
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s09790g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 001_M10.ab1: 51999-52743

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003813_080 0.0 - - PREDICTED: uncharacterized protein LOC105133003 [Populus euphratica]
2 Hb_040747_010 0.1960677932 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
3 Hb_013358_100 0.1981959444 - - unknown [Medicago truncatula]
4 Hb_000479_290 0.2037248888 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X2 [Jatropha curcas]
5 Hb_003673_050 0.2170658336 - - hypothetical protein POPTR_0001s40990g [Populus trichocarpa]
6 Hb_154538_010 0.2221741005 - - -
7 Hb_000242_030 0.223677961 - - PREDICTED: uncharacterized protein LOC102608003 [Citrus sinensis]
8 Hb_004837_050 0.2304659338 - - -
9 Hb_002250_050 0.2406237106 - - PREDICTED: uncharacterized protein LOC105638972 [Jatropha curcas]
10 Hb_009393_180 0.241409949 - - PREDICTED: uncharacterized protein LOC101292333 [Fragaria vesca subsp. vesca]
11 Hb_004917_040 0.2423354192 - - hypothetical protein POPTR_0009s03470g [Populus trichocarpa]
12 Hb_001357_280 0.2442955 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
13 Hb_025595_010 0.2500761436 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
14 Hb_077573_010 0.2509132315 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_005694_010 0.2515728817 transcription factor TF Family: C2C2-Dof F-box family protein, putative isoform 1 [Theobroma cacao]
16 Hb_002818_050 0.2545076218 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
17 Hb_004052_160 0.2548290751 - - Chain A, Rna Binding Protein
18 Hb_001493_080 0.2558382693 - - PREDICTED: RING-H2 finger protein ATL3-like [Jatropha curcas]
19 Hb_000438_150 0.2559244307 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 7 [Jatropha curcas]
20 Hb_001865_040 0.2569206858 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]

Gene co-expression network

sample Hb_003813_080 Hb_003813_080 Hb_040747_010 Hb_040747_010 Hb_003813_080--Hb_040747_010 Hb_013358_100 Hb_013358_100 Hb_003813_080--Hb_013358_100 Hb_000479_290 Hb_000479_290 Hb_003813_080--Hb_000479_290 Hb_003673_050 Hb_003673_050 Hb_003813_080--Hb_003673_050 Hb_154538_010 Hb_154538_010 Hb_003813_080--Hb_154538_010 Hb_000242_030 Hb_000242_030 Hb_003813_080--Hb_000242_030 Hb_106688_010 Hb_106688_010 Hb_040747_010--Hb_106688_010 Hb_040747_010--Hb_013358_100 Hb_000179_180 Hb_000179_180 Hb_040747_010--Hb_000179_180 Hb_000116_150 Hb_000116_150 Hb_040747_010--Hb_000116_150 Hb_077573_010 Hb_077573_010 Hb_040747_010--Hb_077573_010 Hb_145317_010 Hb_145317_010 Hb_040747_010--Hb_145317_010 Hb_177152_010 Hb_177152_010 Hb_013358_100--Hb_177152_010 Hb_068569_010 Hb_068569_010 Hb_013358_100--Hb_068569_010 Hb_035436_010 Hb_035436_010 Hb_013358_100--Hb_035436_010 Hb_004935_080 Hb_004935_080 Hb_013358_100--Hb_004935_080 Hb_065841_010 Hb_065841_010 Hb_013358_100--Hb_065841_010 Hb_000322_180 Hb_000322_180 Hb_000479_290--Hb_000322_180 Hb_000479_290--Hb_040747_010 Hb_012506_010 Hb_012506_010 Hb_000479_290--Hb_012506_010 Hb_014819_010 Hb_014819_010 Hb_000479_290--Hb_014819_010 Hb_000479_290--Hb_000116_150 Hb_133724_010 Hb_133724_010 Hb_000479_290--Hb_133724_010 Hb_003998_010 Hb_003998_010 Hb_003673_050--Hb_003998_010 Hb_000453_100 Hb_000453_100 Hb_003673_050--Hb_000453_100 Hb_002541_020 Hb_002541_020 Hb_003673_050--Hb_002541_020 Hb_028207_060 Hb_028207_060 Hb_003673_050--Hb_028207_060 Hb_002213_040 Hb_002213_040 Hb_003673_050--Hb_002213_040 Hb_005694_010 Hb_005694_010 Hb_003673_050--Hb_005694_010 Hb_154538_010--Hb_145317_010 Hb_017159_010 Hb_017159_010 Hb_154538_010--Hb_017159_010 Hb_001178_040 Hb_001178_040 Hb_154538_010--Hb_001178_040 Hb_000342_140 Hb_000342_140 Hb_154538_010--Hb_000342_140 Hb_001754_060 Hb_001754_060 Hb_154538_010--Hb_001754_060 Hb_154538_010--Hb_040747_010 Hb_004837_050 Hb_004837_050 Hb_000242_030--Hb_004837_050 Hb_000045_160 Hb_000045_160 Hb_000242_030--Hb_000045_160 Hb_025964_040 Hb_025964_040 Hb_000242_030--Hb_025964_040 Hb_000470_110 Hb_000470_110 Hb_000242_030--Hb_000470_110 Hb_000523_030 Hb_000523_030 Hb_000242_030--Hb_000523_030 Hb_000631_090 Hb_000631_090 Hb_000242_030--Hb_000631_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.7576 9.69681 3.35337 10.7209 0.0977682 7.38531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.29483 0.841948 0.215579 1.78318 1.79281

CAGE analysis