Hb_018118_050

Information

Type -
Description -
Location Contig18118: 37437-40690
Sequence    

Annotation

kegg
ID pop:POPTR_0006s07370g
description POPTRDRAFT_801885; hypothetical protein
nr
ID XP_002309006.2
description hypothetical protein POPTR_0006s07370g [Populus trichocarpa]
swissprot
ID Q9LSJ6
description ABC transporter B family member 17 OS=Arabidopsis thaliana GN=ABCB17 PE=3 SV=1
trembl
ID B9HAY0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s07370g PE=3 SV=2
Gene Ontology
ID GO:0000166
description multidrug resistance protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018118_050 0.0 - - hypothetical protein POPTR_0006s07370g [Populus trichocarpa]
2 Hb_006618_040 0.1846787373 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
3 Hb_017491_070 0.1849482696 - - PREDICTED: dnaJ homolog subfamily B member 6-like isoform X1 [Jatropha curcas]
4 Hb_004296_010 0.1979856548 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
5 Hb_013394_060 0.2016335521 - - PREDICTED: IST1-like protein isoform X1 [Jatropha curcas]
6 Hb_000483_380 0.2045766008 - - PREDICTED: bax inhibitor 1-like [Jatropha curcas]
7 Hb_000343_110 0.2067066595 - - Heat shock 70 kDa protein, putative [Ricinus communis]
8 Hb_002999_060 0.2125215119 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
9 Hb_033312_150 0.2132312421 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
10 Hb_002400_230 0.2167258486 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
11 Hb_001277_360 0.2172292948 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
12 Hb_004648_070 0.2175291458 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_000422_110 0.2175720798 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]
14 Hb_009674_080 0.2193348608 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
15 Hb_013749_020 0.2197481328 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
16 Hb_001051_090 0.2201307421 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
17 Hb_002073_280 0.2222560932 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
18 Hb_008406_040 0.2246778326 - - -
19 Hb_004800_240 0.2253510515 - - PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
20 Hb_000941_140 0.226227924 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]

Gene co-expression network

sample Hb_018118_050 Hb_018118_050 Hb_006618_040 Hb_006618_040 Hb_018118_050--Hb_006618_040 Hb_017491_070 Hb_017491_070 Hb_018118_050--Hb_017491_070 Hb_004296_010 Hb_004296_010 Hb_018118_050--Hb_004296_010 Hb_013394_060 Hb_013394_060 Hb_018118_050--Hb_013394_060 Hb_000483_380 Hb_000483_380 Hb_018118_050--Hb_000483_380 Hb_000343_110 Hb_000343_110 Hb_018118_050--Hb_000343_110 Hb_001232_100 Hb_001232_100 Hb_006618_040--Hb_001232_100 Hb_000334_170 Hb_000334_170 Hb_006618_040--Hb_000334_170 Hb_006618_040--Hb_000343_110 Hb_000941_140 Hb_000941_140 Hb_006618_040--Hb_000941_140 Hb_002400_230 Hb_002400_230 Hb_006618_040--Hb_002400_230 Hb_006618_040--Hb_004296_010 Hb_001433_020 Hb_001433_020 Hb_017491_070--Hb_001433_020 Hb_001301_130 Hb_001301_130 Hb_017491_070--Hb_001301_130 Hb_000735_100 Hb_000735_100 Hb_017491_070--Hb_000735_100 Hb_002896_060 Hb_002896_060 Hb_017491_070--Hb_002896_060 Hb_017491_070--Hb_006618_040 Hb_000997_150 Hb_000997_150 Hb_017491_070--Hb_000997_150 Hb_004296_010--Hb_000941_140 Hb_000260_370 Hb_000260_370 Hb_004296_010--Hb_000260_370 Hb_001269_310 Hb_001269_310 Hb_004296_010--Hb_001269_310 Hb_002999_060 Hb_002999_060 Hb_004296_010--Hb_002999_060 Hb_004296_010--Hb_013394_060 Hb_013394_060--Hb_002999_060 Hb_013394_060--Hb_000483_380 Hb_002965_030 Hb_002965_030 Hb_013394_060--Hb_002965_030 Hb_000720_070 Hb_000720_070 Hb_013394_060--Hb_000720_070 Hb_030827_060 Hb_030827_060 Hb_013394_060--Hb_030827_060 Hb_000538_010 Hb_000538_010 Hb_013394_060--Hb_000538_010 Hb_003040_020 Hb_003040_020 Hb_000483_380--Hb_003040_020 Hb_158604_010 Hb_158604_010 Hb_000483_380--Hb_158604_010 Hb_033312_150 Hb_033312_150 Hb_000483_380--Hb_033312_150 Hb_013749_020 Hb_013749_020 Hb_000483_380--Hb_013749_020 Hb_000116_060 Hb_000116_060 Hb_000483_380--Hb_000116_060 Hb_000544_060 Hb_000544_060 Hb_000483_380--Hb_000544_060 Hb_011344_020 Hb_011344_020 Hb_000343_110--Hb_011344_020 Hb_000573_060 Hb_000573_060 Hb_000343_110--Hb_000573_060 Hb_002044_170 Hb_002044_170 Hb_000343_110--Hb_002044_170 Hb_128743_010 Hb_128743_010 Hb_000343_110--Hb_128743_010 Hb_000343_110--Hb_158604_010 Hb_032920_130 Hb_032920_130 Hb_000343_110--Hb_032920_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0401381 0.176228 0.0858498 0.0569051 0.224305 0.0339215
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.056359 0 0.04179 0.0530359 0.0465473

CAGE analysis