Hb_010812_020

Information

Type transcription factor
Description TF Family: IWS1
Location Contig10812: 6190-7705
Sequence    

Annotation

kegg
ID rcu:RCOM_0690190
description transcription elongation factor s-II, putative
nr
ID XP_002520890.1
description transcription elongation factor s-II, putative [Ricinus communis]
swissprot
ID Q9ZVH8
description Transcription elongation factor TFIIS OS=Arabidopsis thaliana GN=TFIIS PE=1 SV=1
trembl
ID B9S4H1
description Transcription elongation factor s-II, putative OS=Ricinus communis GN=RCOM_0690190 PE=4 SV=1
Gene Ontology
ID GO:0003676
description transcript elongation factor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02471: 3464-5245 , PASA_asmbl_02472: 3413-5218 , PASA_asmbl_02475: 5339-5660
cDNA
(Sanger)
(ID:Location)		 011_F14.ab1: 3507-5218 , 022_P15.ab1: 3413-5218 , 045_P08.ab1: 3480-5218 , 048_G01.ab1: 3413-5218

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010812_020 0.0 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
2 Hb_009486_210 0.1639207209 - - -
3 Hb_004724_220 0.1674327861 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]
4 Hb_001584_060 0.1715671897 - - PREDICTED: transcription factor bHLH149 [Jatropha curcas]
5 Hb_000345_510 0.1739676339 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
6 Hb_000260_800 0.1761316685 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Populus euphratica]
7 Hb_011053_010 0.1762048148 - - PREDICTED: uncharacterized protein LOC105631146 [Jatropha curcas]
8 Hb_001105_170 0.177031764 - - PREDICTED: uncharacterized protein LOC105642727 isoform X1 [Jatropha curcas]
9 Hb_005245_120 0.179138254 - - XPA-binding protein, putative [Ricinus communis]
10 Hb_009767_070 0.1800596128 - - PREDICTED: uncharacterized protein LOC105631980 [Jatropha curcas]
11 Hb_146255_020 0.1811293905 - - PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]
12 Hb_100790_010 0.1840028144 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004312_010 0.1849591608 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X2 [Jatropha curcas]
14 Hb_006615_050 0.1863878342 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
15 Hb_000025_370 0.1865955208 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
16 Hb_006061_040 0.1871030871 - - PREDICTED: protein PHYLLO, chloroplastic [Jatropha curcas]
17 Hb_002307_180 0.1873110671 - - PREDICTED: rRNA-processing protein EFG1 isoform X2 [Jatropha curcas]
18 Hb_002343_040 0.1886370467 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000369_010 0.189223959 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001712_070 0.1893684855 - - PREDICTED: HD domain-containing protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_010812_020 Hb_010812_020 Hb_009486_210 Hb_009486_210 Hb_010812_020--Hb_009486_210 Hb_004724_220 Hb_004724_220 Hb_010812_020--Hb_004724_220 Hb_001584_060 Hb_001584_060 Hb_010812_020--Hb_001584_060 Hb_000345_510 Hb_000345_510 Hb_010812_020--Hb_000345_510 Hb_000260_800 Hb_000260_800 Hb_010812_020--Hb_000260_800 Hb_011053_010 Hb_011053_010 Hb_010812_020--Hb_011053_010 Hb_007741_130 Hb_007741_130 Hb_009486_210--Hb_007741_130 Hb_100790_010 Hb_100790_010 Hb_009486_210--Hb_100790_010 Hb_005245_120 Hb_005245_120 Hb_009486_210--Hb_005245_120 Hb_015807_160 Hb_015807_160 Hb_009486_210--Hb_015807_160 Hb_000025_370 Hb_000025_370 Hb_009486_210--Hb_000025_370 Hb_146255_020 Hb_146255_020 Hb_009486_210--Hb_146255_020 Hb_001377_360 Hb_001377_360 Hb_004724_220--Hb_001377_360 Hb_000291_030 Hb_000291_030 Hb_004724_220--Hb_000291_030 Hb_005194_020 Hb_005194_020 Hb_004724_220--Hb_005194_020 Hb_004648_090 Hb_004648_090 Hb_004724_220--Hb_004648_090 Hb_000979_060 Hb_000979_060 Hb_004724_220--Hb_000979_060 Hb_004635_030 Hb_004635_030 Hb_004724_220--Hb_004635_030 Hb_001143_220 Hb_001143_220 Hb_001584_060--Hb_001143_220 Hb_012016_010 Hb_012016_010 Hb_001584_060--Hb_012016_010 Hb_000694_040 Hb_000694_040 Hb_001584_060--Hb_000694_040 Hb_001459_080 Hb_001459_080 Hb_001584_060--Hb_001459_080 Hb_168878_010 Hb_168878_010 Hb_001584_060--Hb_168878_010 Hb_004787_060 Hb_004787_060 Hb_001584_060--Hb_004787_060 Hb_002272_050 Hb_002272_050 Hb_000345_510--Hb_002272_050 Hb_003213_010 Hb_003213_010 Hb_000345_510--Hb_003213_010 Hb_006132_110 Hb_006132_110 Hb_000345_510--Hb_006132_110 Hb_000875_080 Hb_000875_080 Hb_000345_510--Hb_000875_080 Hb_000049_140 Hb_000049_140 Hb_000345_510--Hb_000049_140 Hb_002163_050 Hb_002163_050 Hb_000345_510--Hb_002163_050 Hb_001998_120 Hb_001998_120 Hb_000260_800--Hb_001998_120 Hb_002284_150 Hb_002284_150 Hb_000260_800--Hb_002284_150 Hb_000028_070 Hb_000028_070 Hb_000260_800--Hb_000028_070 Hb_000260_800--Hb_012016_010 Hb_180424_010 Hb_180424_010 Hb_000260_800--Hb_180424_010 Hb_001377_030 Hb_001377_030 Hb_000260_800--Hb_001377_030 Hb_000413_060 Hb_000413_060 Hb_011053_010--Hb_000413_060 Hb_000390_090 Hb_000390_090 Hb_011053_010--Hb_000390_090 Hb_006061_040 Hb_006061_040 Hb_011053_010--Hb_006061_040 Hb_000163_100 Hb_000163_100 Hb_011053_010--Hb_000163_100 Hb_002343_040 Hb_002343_040 Hb_011053_010--Hb_002343_040 Hb_011053_010--Hb_146255_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.178007 0.430898 1.22018 0.380795 0.454731 0.181682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.325913 0.988762 0.270787 0.249962 0.0752698

CAGE analysis