Hb_001584_060

Information

Type -
Description -
Location Contig1584: 57576-58175
Sequence    

Annotation

kegg
ID rcu:RCOM_1435500
description transcription factor, putative
nr
ID XP_012088908.1
description PREDICTED: transcription factor bHLH149 [Jatropha curcas]
swissprot
ID O80482
description Transcription factor bHLH149 OS=Arabidopsis thaliana GN=BHLH149 PE=1 SV=1
trembl
ID A0A067JKQ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23231 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh149-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13958: 57267-58292 , PASA_asmbl_13959: 57273-58290
cDNA
(Sanger)
(ID:Location)		 008_C05.ab1: 57273-57919 , 027_K05.ab1: 57267-57849 , 035_O11.ab1: 57269-58142

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_060 0.0 - - PREDICTED: transcription factor bHLH149 [Jatropha curcas]
2 Hb_001143_220 0.1226757214 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
3 Hb_012016_010 0.1283187707 - - PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial [Jatropha curcas]
4 Hb_000694_040 0.1311155705 - - Uncharacterized protein isoform 1 [Theobroma cacao]
5 Hb_001459_080 0.1345979726 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
6 Hb_168878_010 0.1378220568 - - 60S ribosomal protein L32A [Hevea brasiliensis]
7 Hb_004787_060 0.1378993356 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
8 Hb_140833_010 0.1430153146 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
9 Hb_002066_070 0.1491817039 - - PREDICTED: uncharacterized protein LOC105631043 [Jatropha curcas]
10 Hb_047823_010 0.1500013898 - - hypothetical protein CARUB_v10024013mg [Capsella rubella]
11 Hb_021419_020 0.1518605166 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
12 Hb_000009_530 0.1525336169 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
13 Hb_008112_040 0.1534727005 - - PREDICTED: uncharacterized protein LOC105637336 [Jatropha curcas]
14 Hb_002918_210 0.1536511645 - - PREDICTED: uncharacterized protein LOC105138897 isoform X2 [Populus euphratica]
15 Hb_003621_020 0.1567338376 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
16 Hb_006360_030 0.1578451442 - - -
17 Hb_005322_040 0.1578499408 - - 60S ribosomal protein L9, putative [Ricinus communis]
18 Hb_000286_070 0.1579199473 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
19 Hb_000265_240 0.1587318109 - - PREDICTED: uncharacterized protein LOC105643590 isoform X1 [Jatropha curcas]
20 Hb_000025_230 0.1595354438 - - PREDICTED: 10 kDa chaperonin [Vitis vinifera]

Gene co-expression network

sample Hb_001584_060 Hb_001584_060 Hb_001143_220 Hb_001143_220 Hb_001584_060--Hb_001143_220 Hb_012016_010 Hb_012016_010 Hb_001584_060--Hb_012016_010 Hb_000694_040 Hb_000694_040 Hb_001584_060--Hb_000694_040 Hb_001459_080 Hb_001459_080 Hb_001584_060--Hb_001459_080 Hb_168878_010 Hb_168878_010 Hb_001584_060--Hb_168878_010 Hb_004787_060 Hb_004787_060 Hb_001584_060--Hb_004787_060 Hb_000260_550 Hb_000260_550 Hb_001143_220--Hb_000260_550 Hb_001143_220--Hb_168878_010 Hb_001143_220--Hb_001459_080 Hb_007044_130 Hb_007044_130 Hb_001143_220--Hb_007044_130 Hb_002783_270 Hb_002783_270 Hb_001143_220--Hb_002783_270 Hb_001754_250 Hb_001754_250 Hb_001143_220--Hb_001754_250 Hb_000638_290 Hb_000638_290 Hb_012016_010--Hb_000638_290 Hb_001998_120 Hb_001998_120 Hb_012016_010--Hb_001998_120 Hb_000009_530 Hb_000009_530 Hb_012016_010--Hb_000009_530 Hb_003621_020 Hb_003621_020 Hb_012016_010--Hb_003621_020 Hb_004093_090 Hb_004093_090 Hb_012016_010--Hb_004093_090 Hb_000444_080 Hb_000444_080 Hb_012016_010--Hb_000444_080 Hb_004934_030 Hb_004934_030 Hb_000694_040--Hb_004934_030 Hb_000000_360 Hb_000000_360 Hb_000694_040--Hb_000000_360 Hb_007477_070 Hb_007477_070 Hb_000694_040--Hb_007477_070 Hb_002374_170 Hb_002374_170 Hb_000694_040--Hb_002374_170 Hb_000000_210 Hb_000000_210 Hb_000694_040--Hb_000000_210 Hb_000694_040--Hb_004787_060 Hb_001459_080--Hb_168878_010 Hb_001459_080--Hb_002374_170 Hb_001459_080--Hb_004787_060 Hb_000025_230 Hb_000025_230 Hb_001459_080--Hb_000025_230 Hb_001459_080--Hb_000260_550 Hb_028841_030 Hb_028841_030 Hb_001459_080--Hb_028841_030 Hb_168878_010--Hb_002374_170 Hb_168878_010--Hb_004787_060 Hb_168878_010--Hb_000025_230 Hb_008112_040 Hb_008112_040 Hb_168878_010--Hb_008112_040 Hb_005322_040 Hb_005322_040 Hb_004787_060--Hb_005322_040 Hb_001329_290 Hb_001329_290 Hb_004787_060--Hb_001329_290 Hb_000286_070 Hb_000286_070 Hb_004787_060--Hb_000286_070 Hb_021419_020 Hb_021419_020 Hb_004787_060--Hb_021419_020 Hb_004449_170 Hb_004449_170 Hb_004787_060--Hb_004449_170 Hb_010921_010 Hb_010921_010 Hb_004787_060--Hb_010921_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
84.6669 53.3546 191.522 48.6357 137.414 83.0456
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.0512 250.216 76.6149 31.8284 17.5077

CAGE analysis