Hb_010710_100

Information

Type -
Description -
Location Contig10710: 64717-81353
Sequence    

Annotation

kegg
ID rcu:RCOM_0733440
description kinase, putative (EC:2.7.11.22)
nr
ID XP_002520526.1
description kinase, putative [Ricinus communis]
swissprot
ID O80939
description L-type lectin-domain containing receptor kinase IV.1 OS=Arabidopsis thaliana GN=LECRK41 PE=2 SV=1
trembl
ID B9S3F7
description Kinase, putative OS=Ricinus communis GN=RCOM_0733440 PE=3 SV=1
Gene Ontology
ID GO:0004693
description concanavalin a-like lectin protein kinase family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02260: 66380-71273 , PASA_asmbl_02261: 71321-71705 , PASA_asmbl_02262: 71899-72105 , PASA_asmbl_02263: 72175-72571
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010710_100 0.0 - - kinase, putative [Ricinus communis]
2 Hb_000898_090 0.186337223 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105633600 isoform X1 [Jatropha curcas]
3 Hb_000186_110 0.2032123556 - - hypothetical protein CISIN_1g020639mg [Citrus sinensis]
4 Hb_001377_210 0.2045806534 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
5 Hb_027298_020 0.2110791012 - - hypothetical protein POPTR_0005s05760g [Populus trichocarpa]
6 Hb_107647_010 0.2169828601 - - PREDICTED: uncharacterized protein ycf39 [Jatropha curcas]
7 Hb_010407_090 0.2182569175 - - PREDICTED: aldo-keto reductase isoform X1 [Jatropha curcas]
8 Hb_001390_020 0.2195363776 - - malate dehydrogenase, putative [Ricinus communis]
9 Hb_000018_130 0.2206853105 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
10 Hb_000130_330 0.2211008606 transcription factor TF Family: TCP PREDICTED: transcription factor TCP3-like [Jatropha curcas]
11 Hb_134949_010 0.2227906684 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
12 Hb_000175_640 0.2255367436 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Jatropha curcas]
13 Hb_007803_040 0.2257621378 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
14 Hb_000340_270 0.2283078411 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
15 Hb_026437_020 0.2318645962 - - ring finger protein, putative [Ricinus communis]
16 Hb_001584_050 0.2318888692 - - PREDICTED: NHL repeat-containing protein 2 isoform X1 [Jatropha curcas]
17 Hb_004611_040 0.2319717234 - - PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_001907_080 0.2320987731 - - PREDICTED: uncharacterized protein LOC105628749 [Jatropha curcas]
19 Hb_000193_220 0.2322569977 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
20 Hb_000107_540 0.2323717131 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]

Gene co-expression network

sample Hb_010710_100 Hb_010710_100 Hb_000898_090 Hb_000898_090 Hb_010710_100--Hb_000898_090 Hb_000186_110 Hb_000186_110 Hb_010710_100--Hb_000186_110 Hb_001377_210 Hb_001377_210 Hb_010710_100--Hb_001377_210 Hb_027298_020 Hb_027298_020 Hb_010710_100--Hb_027298_020 Hb_107647_010 Hb_107647_010 Hb_010710_100--Hb_107647_010 Hb_010407_090 Hb_010407_090 Hb_010710_100--Hb_010407_090 Hb_134949_010 Hb_134949_010 Hb_000898_090--Hb_134949_010 Hb_000029_330 Hb_000029_330 Hb_000898_090--Hb_000029_330 Hb_001195_290 Hb_001195_290 Hb_000898_090--Hb_001195_290 Hb_007803_040 Hb_007803_040 Hb_000898_090--Hb_007803_040 Hb_001517_010 Hb_001517_010 Hb_000898_090--Hb_001517_010 Hb_001584_210 Hb_001584_210 Hb_000898_090--Hb_001584_210 Hb_000118_090 Hb_000118_090 Hb_000186_110--Hb_000118_090 Hb_000062_480 Hb_000062_480 Hb_000186_110--Hb_000062_480 Hb_071126_010 Hb_071126_010 Hb_000186_110--Hb_071126_010 Hb_000130_330 Hb_000130_330 Hb_000186_110--Hb_000130_330 Hb_000175_640 Hb_000175_640 Hb_000186_110--Hb_000175_640 Hb_004611_040 Hb_004611_040 Hb_000186_110--Hb_004611_040 Hb_000914_190 Hb_000914_190 Hb_001377_210--Hb_000914_190 Hb_000107_540 Hb_000107_540 Hb_001377_210--Hb_000107_540 Hb_001584_050 Hb_001584_050 Hb_001377_210--Hb_001584_050 Hb_004162_250 Hb_004162_250 Hb_001377_210--Hb_004162_250 Hb_000608_360 Hb_000608_360 Hb_001377_210--Hb_000608_360 Hb_006915_010 Hb_006915_010 Hb_001377_210--Hb_006915_010 Hb_000703_070 Hb_000703_070 Hb_027298_020--Hb_000703_070 Hb_001300_130 Hb_001300_130 Hb_027298_020--Hb_001300_130 Hb_000803_170 Hb_000803_170 Hb_027298_020--Hb_000803_170 Hb_010557_010 Hb_010557_010 Hb_027298_020--Hb_010557_010 Hb_002232_380 Hb_002232_380 Hb_027298_020--Hb_002232_380 Hb_002811_310 Hb_002811_310 Hb_027298_020--Hb_002811_310 Hb_002609_140 Hb_002609_140 Hb_107647_010--Hb_002609_140 Hb_107647_010--Hb_010407_090 Hb_002249_090 Hb_002249_090 Hb_107647_010--Hb_002249_090 Hb_005977_040 Hb_005977_040 Hb_107647_010--Hb_005977_040 Hb_107373_010 Hb_107373_010 Hb_107647_010--Hb_107373_010 Hb_117807_020 Hb_117807_020 Hb_107647_010--Hb_117807_020 Hb_010407_090--Hb_002249_090 Hb_010407_090--Hb_002609_140 Hb_002006_050 Hb_002006_050 Hb_010407_090--Hb_002006_050 Hb_000174_080 Hb_000174_080 Hb_010407_090--Hb_000174_080 Hb_000261_470 Hb_000261_470 Hb_010407_090--Hb_000261_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00536148 0 0.271705 0.0345487 0.0472432 0.0140419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0121499 0.0286841 0 0.0606225 0.572807

CAGE analysis