Hb_010583_030

Information

Type -
Description -
Location Contig10583: 27642-32051
Sequence    

Annotation

kegg
ID pvu:PHAVU_011G114500g
description hypothetical protein
nr
ID XP_007132667.1
description hypothetical protein PHAVU_011G114500g, partial [Phaseolus vulgaris]
swissprot
ID -
description -
trembl
ID V7AKN7
description Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_011G114500g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01913: 27573-27997
cDNA
(Sanger)
(ID:Location)		 010_D24.ab1: 27573-27989 , 041_C08.ab1: 27573-27997 , 047_I03.ab1: 27573-27989

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010583_030 0.0 - - hypothetical protein PHAVU_011G114500g, partial [Phaseolus vulgaris]
2 Hb_002085_090 0.1869722921 - - -
3 Hb_000202_070 0.189003168 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
4 Hb_074109_010 0.1940209313 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
5 Hb_003055_070 0.19703422 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
6 Hb_000940_030 0.1990664414 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
7 Hb_000946_060 0.2010172523 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic-like isoform X2 [Jatropha curcas]
8 Hb_010868_040 0.2022346032 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
9 Hb_003020_250 0.2023873526 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
10 Hb_000009_420 0.2032175793 - - PREDICTED: uncharacterized protein LOC105639614 isoform X2 [Jatropha curcas]
11 Hb_000926_040 0.2036721923 - - PREDICTED: DNA mismatch repair protein MSH5 [Jatropha curcas]
12 Hb_034579_020 0.2056620959 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002498_300 0.2066663435 - - BnaC04g50140D [Brassica napus]
14 Hb_003020_070 0.2104607494 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
15 Hb_003915_020 0.2112956275 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
16 Hb_000062_130 0.2126773486 - - cytochrome P450, putative [Ricinus communis]
17 Hb_000227_400 0.2128261341 - - lipoxygenase, putative [Ricinus communis]
18 Hb_004440_070 0.2131982943 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520 [Jatropha curcas]
19 Hb_000181_330 0.2132069601 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
20 Hb_003177_050 0.2135850089 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Populus euphratica]

Gene co-expression network

sample Hb_010583_030 Hb_010583_030 Hb_002085_090 Hb_002085_090 Hb_010583_030--Hb_002085_090 Hb_000202_070 Hb_000202_070 Hb_010583_030--Hb_000202_070 Hb_074109_010 Hb_074109_010 Hb_010583_030--Hb_074109_010 Hb_003055_070 Hb_003055_070 Hb_010583_030--Hb_003055_070 Hb_000940_030 Hb_000940_030 Hb_010583_030--Hb_000940_030 Hb_000946_060 Hb_000946_060 Hb_010583_030--Hb_000946_060 Hb_004855_020 Hb_004855_020 Hb_002085_090--Hb_004855_020 Hb_010868_040 Hb_010868_040 Hb_002085_090--Hb_010868_040 Hb_000926_040 Hb_000926_040 Hb_002085_090--Hb_000926_040 Hb_000227_400 Hb_000227_400 Hb_002085_090--Hb_000227_400 Hb_000320_040 Hb_000320_040 Hb_002085_090--Hb_000320_040 Hb_000009_420 Hb_000009_420 Hb_002085_090--Hb_000009_420 Hb_002316_020 Hb_002316_020 Hb_000202_070--Hb_002316_020 Hb_010174_180 Hb_010174_180 Hb_000202_070--Hb_010174_180 Hb_003607_140 Hb_003607_140 Hb_000202_070--Hb_003607_140 Hb_000210_040 Hb_000210_040 Hb_000202_070--Hb_000210_040 Hb_000046_430 Hb_000046_430 Hb_000202_070--Hb_000046_430 Hb_000901_010 Hb_000901_010 Hb_000202_070--Hb_000901_010 Hb_000005_100 Hb_000005_100 Hb_074109_010--Hb_000005_100 Hb_003688_140 Hb_003688_140 Hb_074109_010--Hb_003688_140 Hb_074109_010--Hb_003055_070 Hb_004648_030 Hb_004648_030 Hb_074109_010--Hb_004648_030 Hb_000834_060 Hb_000834_060 Hb_074109_010--Hb_000834_060 Hb_004223_270 Hb_004223_270 Hb_074109_010--Hb_004223_270 Hb_003055_070--Hb_000940_030 Hb_007765_130 Hb_007765_130 Hb_003055_070--Hb_007765_130 Hb_000446_040 Hb_000446_040 Hb_003055_070--Hb_000446_040 Hb_003055_070--Hb_000005_100 Hb_000093_140 Hb_000093_140 Hb_003055_070--Hb_000093_140 Hb_003055_070--Hb_004223_270 Hb_000940_030--Hb_010868_040 Hb_000310_060 Hb_000310_060 Hb_000940_030--Hb_000310_060 Hb_000270_280 Hb_000270_280 Hb_000940_030--Hb_000270_280 Hb_000996_080 Hb_000996_080 Hb_000940_030--Hb_000996_080 Hb_001365_030 Hb_001365_030 Hb_000940_030--Hb_001365_030 Hb_002716_110 Hb_002716_110 Hb_000946_060--Hb_002716_110 Hb_032568_010 Hb_032568_010 Hb_000946_060--Hb_032568_010 Hb_005305_010 Hb_005305_010 Hb_000946_060--Hb_005305_010 Hb_000946_060--Hb_074109_010 Hb_004357_060 Hb_004357_060 Hb_000946_060--Hb_004357_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.399844 1.25206 3.30822 1.39381 0 0.145386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.743303 0 0.823931 2.37271

CAGE analysis