Hb_005700_010

Information

Type -
Description -
Location Contig5700: 25-7866
Sequence    

Annotation

kegg
ID bvg:104898079
description uncharacterized LOC104898079
nr
ID XP_010683389.1
description PREDICTED: uncharacterized protein LOC104898079 [Beta vulgaris subsp. vulgaris]
swissprot
ID P09523
description Enzymatic polyprotein OS=Figwort mosaic virus (strain DxS) GN=ORF V PE=3 SV=1
trembl
ID E2DN01
description Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1
Gene Ontology
ID GO:0003676
description hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005700_010 0.0 - - PREDICTED: uncharacterized protein LOC104898079 [Beta vulgaris subsp. vulgaris]
2 Hb_002836_080 0.2755447641 - - -
3 Hb_006120_110 0.3008823999 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003207_110 0.3010593958 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl coenzyme A synthase [Hevea brasiliensis]
5 Hb_009493_010 0.313560484 - - Minor allergen Alt a, putative [Ricinus communis]
6 Hb_012022_130 0.3160831161 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
7 Hb_010897_030 0.3162704591 - - conserved hypothetical protein [Ricinus communis]
8 Hb_144484_010 0.3177166032 - - calcineurin-like phosphoesterase [Manihot esculenta]
9 Hb_033152_050 0.3193701127 - - hypothetical protein JCGZ_04890 [Jatropha curcas]
10 Hb_007305_030 0.3220452613 - - serine-threonine protein kinase, putative [Ricinus communis]
11 Hb_002471_070 0.3239185099 - - Tartrate-resistant acid phosphatase type 5 precursor, putative [Ricinus communis]
12 Hb_023536_010 0.3244401239 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
13 Hb_030458_010 0.326931908 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_014497_120 0.3315665174 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 [Hevea brasiliensis]
15 Hb_000920_150 0.3321562252 - - annexin [Manihot esculenta]
16 Hb_009510_020 0.332352124 - - PREDICTED: phosphatidylinositol transfer protein 2-like [Jatropha curcas]
17 Hb_001504_140 0.3350824956 - - PREDICTED: deSI-like protein At4g17486 [Populus euphratica]
18 Hb_025964_050 0.3380992445 - - PREDICTED: neural Wiskott-Aldrich syndrome protein [Jatropha curcas]
19 Hb_000920_370 0.3412708819 - - hypothetical protein JCGZ_24527 [Jatropha curcas]
20 Hb_000080_200 0.3432659009 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]

Gene co-expression network

sample Hb_005700_010 Hb_005700_010 Hb_002836_080 Hb_002836_080 Hb_005700_010--Hb_002836_080 Hb_006120_110 Hb_006120_110 Hb_005700_010--Hb_006120_110 Hb_003207_110 Hb_003207_110 Hb_005700_010--Hb_003207_110 Hb_009493_010 Hb_009493_010 Hb_005700_010--Hb_009493_010 Hb_012022_130 Hb_012022_130 Hb_005700_010--Hb_012022_130 Hb_010897_030 Hb_010897_030 Hb_005700_010--Hb_010897_030 Hb_033152_050 Hb_033152_050 Hb_002836_080--Hb_033152_050 Hb_006018_030 Hb_006018_030 Hb_002836_080--Hb_006018_030 Hb_001391_020 Hb_001391_020 Hb_002836_080--Hb_001391_020 Hb_002836_080--Hb_003207_110 Hb_048937_030 Hb_048937_030 Hb_002836_080--Hb_048937_030 Hb_000920_150 Hb_000920_150 Hb_002836_080--Hb_000920_150 Hb_007181_040 Hb_007181_040 Hb_006120_110--Hb_007181_040 Hb_073973_140 Hb_073973_140 Hb_006120_110--Hb_073973_140 Hb_001454_240 Hb_001454_240 Hb_006120_110--Hb_001454_240 Hb_024682_020 Hb_024682_020 Hb_006120_110--Hb_024682_020 Hb_002272_010 Hb_002272_010 Hb_006120_110--Hb_002272_010 Hb_000270_440 Hb_000270_440 Hb_006120_110--Hb_000270_440 Hb_002471_070 Hb_002471_070 Hb_003207_110--Hb_002471_070 Hb_003207_110--Hb_000920_150 Hb_005396_040 Hb_005396_040 Hb_003207_110--Hb_005396_040 Hb_023214_010 Hb_023214_010 Hb_003207_110--Hb_023214_010 Hb_002876_030 Hb_002876_030 Hb_003207_110--Hb_002876_030 Hb_001035_040 Hb_001035_040 Hb_003207_110--Hb_001035_040 Hb_023536_010 Hb_023536_010 Hb_009493_010--Hb_023536_010 Hb_009493_010--Hb_010897_030 Hb_002909_060 Hb_002909_060 Hb_009493_010--Hb_002909_060 Hb_002600_100 Hb_002600_100 Hb_009493_010--Hb_002600_100 Hb_003893_090 Hb_003893_090 Hb_009493_010--Hb_003893_090 Hb_000635_140 Hb_000635_140 Hb_009493_010--Hb_000635_140 Hb_000922_120 Hb_000922_120 Hb_012022_130--Hb_000922_120 Hb_023301_010 Hb_023301_010 Hb_012022_130--Hb_023301_010 Hb_144484_010 Hb_144484_010 Hb_012022_130--Hb_144484_010 Hb_001712_040 Hb_001712_040 Hb_012022_130--Hb_001712_040 Hb_001504_140 Hb_001504_140 Hb_012022_130--Hb_001504_140 Hb_000138_170 Hb_000138_170 Hb_012022_130--Hb_000138_170 Hb_010897_030--Hb_000635_140 Hb_002603_060 Hb_002603_060 Hb_010897_030--Hb_002603_060 Hb_001123_210 Hb_001123_210 Hb_010897_030--Hb_001123_210 Hb_010897_030--Hb_023536_010 Hb_029904_040 Hb_029904_040 Hb_010897_030--Hb_029904_040 Hb_000896_120 Hb_000896_120 Hb_010897_030--Hb_000896_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00921804 0.00613053 0 0.0108807 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0168977 0.00664921 0.0128037 0 0

CAGE analysis