Hb_005306_120

Information

Type -
Description -
Location Contig5306: 83634-83984
Sequence    

Annotation

kegg
ID rcu:RCOM_0654960
description hypothetical protein
nr
ID XP_002521377.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S5V8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0654960 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005306_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000110_290 0.1953605121 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000364_190 0.2006836624 - - -
4 Hb_000754_070 0.2357505569 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000027_210 0.2391530946 - - Os01g0689300, partial [Oryza sativa Japonica Group]
6 Hb_005813_010 0.2477265407 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
7 Hb_001248_120 0.2629937151 - - conserved hypothetical protein [Ricinus communis]
8 Hb_010921_040 0.2677293964 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105634154 [Jatropha curcas]
9 Hb_006788_040 0.2757221204 - - calmodulin, putative [Ricinus communis]
10 Hb_032972_010 0.2825227024 - - Glycolipid transfer protein, putative [Ricinus communis]
11 Hb_011947_020 0.2836924567 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
12 Hb_001148_100 0.2895789251 - - -
13 Hb_002686_260 0.2897713739 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
14 Hb_004724_450 0.2899666622 - - PREDICTED: uncharacterized protein LOC105647069 isoform X1 [Jatropha curcas]
15 Hb_030982_060 0.2905674798 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000811_080 0.2916568225 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002119_140 0.2922321093 - - PREDICTED: uncharacterized protein LOC105634172 [Jatropha curcas]
18 Hb_002539_040 0.2924176419 - - SPFH domain-containing protein 2 precursor, putative [Ricinus communis]
19 Hb_000567_180 0.2945740778 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.5 [Jatropha curcas]
20 Hb_002097_140 0.2956781683 - - CHY zinc finger family protein, expressed [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_005306_120 Hb_005306_120 Hb_000110_290 Hb_000110_290 Hb_005306_120--Hb_000110_290 Hb_000364_190 Hb_000364_190 Hb_005306_120--Hb_000364_190 Hb_000754_070 Hb_000754_070 Hb_005306_120--Hb_000754_070 Hb_000027_210 Hb_000027_210 Hb_005306_120--Hb_000027_210 Hb_005813_010 Hb_005813_010 Hb_005306_120--Hb_005813_010 Hb_001248_120 Hb_001248_120 Hb_005306_120--Hb_001248_120 Hb_008143_040 Hb_008143_040 Hb_000110_290--Hb_008143_040 Hb_000567_180 Hb_000567_180 Hb_000110_290--Hb_000567_180 Hb_000110_290--Hb_005813_010 Hb_009545_030 Hb_009545_030 Hb_000110_290--Hb_009545_030 Hb_000186_290 Hb_000186_290 Hb_000110_290--Hb_000186_290 Hb_187677_010 Hb_187677_010 Hb_000364_190--Hb_187677_010 Hb_011947_020 Hb_011947_020 Hb_000364_190--Hb_011947_020 Hb_000849_060 Hb_000849_060 Hb_000364_190--Hb_000849_060 Hb_015778_030 Hb_015778_030 Hb_000364_190--Hb_015778_030 Hb_001989_100 Hb_001989_100 Hb_000364_190--Hb_001989_100 Hb_005332_040 Hb_005332_040 Hb_000754_070--Hb_005332_040 Hb_002686_260 Hb_002686_260 Hb_000754_070--Hb_002686_260 Hb_001148_100 Hb_001148_100 Hb_000754_070--Hb_001148_100 Hb_000086_290 Hb_000086_290 Hb_000754_070--Hb_000086_290 Hb_000754_070--Hb_000027_210 Hb_032972_010 Hb_032972_010 Hb_000754_070--Hb_032972_010 Hb_002781_050 Hb_002781_050 Hb_000027_210--Hb_002781_050 Hb_001148_090 Hb_001148_090 Hb_000027_210--Hb_001148_090 Hb_000027_210--Hb_001148_100 Hb_002539_040 Hb_002539_040 Hb_000027_210--Hb_002539_040 Hb_002151_060 Hb_002151_060 Hb_000027_210--Hb_002151_060 Hb_001486_350 Hb_001486_350 Hb_000027_210--Hb_001486_350 Hb_002097_140 Hb_002097_140 Hb_005813_010--Hb_002097_140 Hb_007138_030 Hb_007138_030 Hb_005813_010--Hb_007138_030 Hb_000110_380 Hb_000110_380 Hb_005813_010--Hb_000110_380 Hb_122940_010 Hb_122940_010 Hb_005813_010--Hb_122940_010 Hb_005408_070 Hb_005408_070 Hb_005813_010--Hb_005408_070 Hb_005813_010--Hb_000567_180 Hb_094529_020 Hb_094529_020 Hb_001248_120--Hb_094529_020 Hb_005529_020 Hb_005529_020 Hb_001248_120--Hb_005529_020 Hb_001195_670 Hb_001195_670 Hb_001248_120--Hb_001195_670 Hb_000160_050 Hb_000160_050 Hb_001248_120--Hb_000160_050 Hb_003411_120 Hb_003411_120 Hb_001248_120--Hb_003411_120 Hb_000450_170 Hb_000450_170 Hb_001248_120--Hb_000450_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.10898 1.49445 1.71255 66.634 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.97567 22.4602 1.5603 28.0436 10.9208

CAGE analysis