Hb_000110_290

Information

Type -
Description -
Location Contig110: 319334-321068
Sequence    

Annotation

kegg
ID rcu:RCOM_0353110
description hypothetical protein
nr
ID XP_002529124.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9ST05
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0353110 PE=4 SV=1
Gene Ontology
ID GO:0016301
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03072: 317965-321278 , PASA_asmbl_03073: 319386-321062
cDNA
(Sanger)
(ID:Location)		 007_C13.ab1: 319697-321278 , 015_N23.ab1: 319740-321278 , 032_L04.ab1: 319761-321278

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000110_290 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008143_040 0.1751958233 - - Alpha-expansin 4 precursor, putative [Ricinus communis]
3 Hb_000567_180 0.1812993851 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.5 [Jatropha curcas]
4 Hb_005813_010 0.1877408369 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
5 Hb_005306_120 0.1953605121 - - conserved hypothetical protein [Ricinus communis]
6 Hb_009545_030 0.2021593354 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
7 Hb_000186_290 0.2047685163 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
8 Hb_001148_100 0.2100801896 - - -
9 Hb_002539_040 0.2112453297 - - SPFH domain-containing protein 2 precursor, putative [Ricinus communis]
10 Hb_000110_380 0.2120795085 - - PREDICTED: uncharacterized protein LOC105642019 [Jatropha curcas]
11 Hb_007138_030 0.2129473315 - - PREDICTED: putative disease resistance protein At4g11170 [Jatropha curcas]
12 Hb_007416_290 0.2149050209 - - PREDICTED: plasma membrane ATPase 4-like [Pyrus x bretschneideri]
13 Hb_002471_260 0.2190177413 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105634154 [Jatropha curcas]
14 Hb_001159_170 0.2210161557 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
15 Hb_000811_080 0.2258321857 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003592_030 0.2281420956 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
17 Hb_021409_140 0.2287506937 - - PREDICTED: trehalase isoform X1 [Jatropha curcas]
18 Hb_000175_470 0.2310880205 - - lactoylglutathione lyase, putative [Ricinus communis]
19 Hb_000946_070 0.2312592082 - - chaperone protein DNAj, putative [Ricinus communis]
20 Hb_000027_210 0.2314377815 - - Os01g0689300, partial [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_000110_290 Hb_000110_290 Hb_008143_040 Hb_008143_040 Hb_000110_290--Hb_008143_040 Hb_000567_180 Hb_000567_180 Hb_000110_290--Hb_000567_180 Hb_005813_010 Hb_005813_010 Hb_000110_290--Hb_005813_010 Hb_005306_120 Hb_005306_120 Hb_000110_290--Hb_005306_120 Hb_009545_030 Hb_009545_030 Hb_000110_290--Hb_009545_030 Hb_000186_290 Hb_000186_290 Hb_000110_290--Hb_000186_290 Hb_007416_290 Hb_007416_290 Hb_008143_040--Hb_007416_290 Hb_008143_040--Hb_009545_030 Hb_007134_030 Hb_007134_030 Hb_008143_040--Hb_007134_030 Hb_117639_010 Hb_117639_010 Hb_008143_040--Hb_117639_010 Hb_000057_100 Hb_000057_100 Hb_008143_040--Hb_000057_100 Hb_000115_250 Hb_000115_250 Hb_008143_040--Hb_000115_250 Hb_005408_070 Hb_005408_070 Hb_000567_180--Hb_005408_070 Hb_001922_060 Hb_001922_060 Hb_000567_180--Hb_001922_060 Hb_002539_040 Hb_002539_040 Hb_000567_180--Hb_002539_040 Hb_000175_470 Hb_000175_470 Hb_000567_180--Hb_000175_470 Hb_000216_050 Hb_000216_050 Hb_000567_180--Hb_000216_050 Hb_026549_050 Hb_026549_050 Hb_000567_180--Hb_026549_050 Hb_002097_140 Hb_002097_140 Hb_005813_010--Hb_002097_140 Hb_007138_030 Hb_007138_030 Hb_005813_010--Hb_007138_030 Hb_000110_380 Hb_000110_380 Hb_005813_010--Hb_000110_380 Hb_122940_010 Hb_122940_010 Hb_005813_010--Hb_122940_010 Hb_005813_010--Hb_005408_070 Hb_005813_010--Hb_000567_180 Hb_000364_190 Hb_000364_190 Hb_005306_120--Hb_000364_190 Hb_000754_070 Hb_000754_070 Hb_005306_120--Hb_000754_070 Hb_000027_210 Hb_000027_210 Hb_005306_120--Hb_000027_210 Hb_005306_120--Hb_005813_010 Hb_001248_120 Hb_001248_120 Hb_005306_120--Hb_001248_120 Hb_009545_030--Hb_007416_290 Hb_001159_170 Hb_001159_170 Hb_009545_030--Hb_001159_170 Hb_004324_030 Hb_004324_030 Hb_009545_030--Hb_004324_030 Hb_009545_030--Hb_007134_030 Hb_009545_030--Hb_007138_030 Hb_078081_010 Hb_078081_010 Hb_000186_290--Hb_078081_010 Hb_002739_040 Hb_002739_040 Hb_000186_290--Hb_002739_040 Hb_164926_040 Hb_164926_040 Hb_000186_290--Hb_164926_040 Hb_000116_120 Hb_000116_120 Hb_000186_290--Hb_000116_120 Hb_004346_010 Hb_004346_010 Hb_000186_290--Hb_004346_010 Hb_021409_140 Hb_021409_140 Hb_000186_290--Hb_021409_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.179416 1.31558 1.9782 14.3987 0.0256771 0.215266
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.469767 4.34075 0.168579 10.2268 3.83812

CAGE analysis