Hb_005235_040

Information

Type -
Description -
Location Contig5235: 16995-17800
Sequence    

Annotation

kegg
ID rcu:RCOM_1341360
description hypothetical protein
nr
ID XP_009614563.1
description PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID A0A0A9HRG5
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005235_040 0.0 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
2 Hb_011381_070 0.157619485 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
3 Hb_001158_120 0.162496448 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
4 Hb_007483_080 0.1639191991 - - hypothetical protein RCOM_0634810 [Ricinus communis]
5 Hb_001048_100 0.1706031577 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
6 Hb_002571_080 0.1719563326 - - secondary cell wall-related glycosyltransferase family 14 [Populus tremula x Populus tremuloides]
7 Hb_000007_440 0.1720844539 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
8 Hb_000689_010 0.1725395539 desease resistance Gene Name: LRR_8 PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
9 Hb_000329_790 0.1734138181 - - PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]
10 Hb_001179_010 0.1757822449 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
11 Hb_002010_100 0.1758475864 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
12 Hb_000061_310 0.1769654726 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
13 Hb_005999_020 0.1778296276 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
14 Hb_031385_010 0.178167582 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
15 Hb_000366_050 0.1805856552 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
16 Hb_008173_130 0.1840473115 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]
17 Hb_003687_040 0.1850709171 - - PREDICTED: uncharacterized protein LOC105632153 [Jatropha curcas]
18 Hb_001021_100 0.1860552416 - - PREDICTED: wee1-like protein kinase [Jatropha curcas]
19 Hb_002609_290 0.1895502941 - - PREDICTED: non-specific phospholipase C1 [Jatropha curcas]
20 Hb_002095_050 0.1922963005 - - PREDICTED: uncharacterized protein LOC104447479 [Eucalyptus grandis]

Gene co-expression network

sample Hb_005235_040 Hb_005235_040 Hb_011381_070 Hb_011381_070 Hb_005235_040--Hb_011381_070 Hb_001158_120 Hb_001158_120 Hb_005235_040--Hb_001158_120 Hb_007483_080 Hb_007483_080 Hb_005235_040--Hb_007483_080 Hb_001048_100 Hb_001048_100 Hb_005235_040--Hb_001048_100 Hb_002571_080 Hb_002571_080 Hb_005235_040--Hb_002571_080 Hb_000007_440 Hb_000007_440 Hb_005235_040--Hb_000007_440 Hb_000366_050 Hb_000366_050 Hb_011381_070--Hb_000366_050 Hb_011381_070--Hb_001158_120 Hb_000035_490 Hb_000035_490 Hb_011381_070--Hb_000035_490 Hb_002609_290 Hb_002609_290 Hb_011381_070--Hb_002609_290 Hb_001294_040 Hb_001294_040 Hb_011381_070--Hb_001294_040 Hb_132840_020 Hb_132840_020 Hb_011381_070--Hb_132840_020 Hb_001158_120--Hb_000366_050 Hb_001158_120--Hb_001294_040 Hb_001158_120--Hb_002609_290 Hb_005539_100 Hb_005539_100 Hb_001158_120--Hb_005539_100 Hb_001158_120--Hb_007483_080 Hb_002010_100 Hb_002010_100 Hb_007483_080--Hb_002010_100 Hb_007483_080--Hb_000007_440 Hb_002361_010 Hb_002361_010 Hb_007483_080--Hb_002361_010 Hb_002849_180 Hb_002849_180 Hb_007483_080--Hb_002849_180 Hb_000500_230 Hb_000500_230 Hb_007483_080--Hb_000500_230 Hb_031385_010 Hb_031385_010 Hb_001048_100--Hb_031385_010 Hb_000760_080 Hb_000760_080 Hb_001048_100--Hb_000760_080 Hb_000731_210 Hb_000731_210 Hb_001048_100--Hb_000731_210 Hb_002301_370 Hb_002301_370 Hb_001048_100--Hb_002301_370 Hb_000230_360 Hb_000230_360 Hb_001048_100--Hb_000230_360 Hb_000061_310 Hb_000061_310 Hb_001048_100--Hb_000061_310 Hb_005999_020 Hb_005999_020 Hb_002571_080--Hb_005999_020 Hb_000694_050 Hb_000694_050 Hb_002571_080--Hb_000694_050 Hb_010174_180 Hb_010174_180 Hb_002571_080--Hb_010174_180 Hb_002871_110 Hb_002871_110 Hb_002571_080--Hb_002871_110 Hb_001160_020 Hb_001160_020 Hb_002571_080--Hb_001160_020 Hb_002571_080--Hb_000007_440 Hb_000007_440--Hb_002849_180 Hb_000007_440--Hb_002010_100 Hb_006483_090 Hb_006483_090 Hb_000007_440--Hb_006483_090 Hb_000007_440--Hb_001158_120 Hb_006970_170 Hb_006970_170 Hb_000007_440--Hb_006970_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.973409 1.76683 0.722619 0.117024 0.181794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.127429 0.619593 0.846655

CAGE analysis