Hb_005116_110

Information

Type -
Description -
Location Contig5116: 135826-138978
Sequence    

Annotation

kegg
ID rcu:RCOM_0558160
description hypothetical protein
nr
ID XP_012079862.1
description PREDICTED: uncharacterized protein LOC105640215 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K485
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11313 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46352: 135548-138709
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005116_110 0.0 - - PREDICTED: uncharacterized protein LOC105640215 [Jatropha curcas]
2 Hb_000103_390 0.1047062681 - - Pentatricopeptide repeat superfamily protein [Theobroma cacao]
3 Hb_002157_080 0.1132279168 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
4 Hb_000169_020 0.1147992047 transcription factor TF Family: C2C2-CO-like hypothetical protein RCOM_0555710 [Ricinus communis]
5 Hb_001776_020 0.1174085835 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
6 Hb_000103_340 0.1227551391 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
7 Hb_006275_020 0.1232355784 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
8 Hb_004774_090 0.1232597891 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
9 Hb_003929_210 0.1241455639 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
10 Hb_002542_110 0.1242656855 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
11 Hb_017214_040 0.1242664375 - - PREDICTED: E3 ubiquitin-protein ligase COP1 isoform X1 [Jatropha curcas]
12 Hb_000340_040 0.1249720131 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
13 Hb_001488_180 0.1268381746 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
14 Hb_001635_210 0.1277357344 - - PREDICTED: protein EARLY FLOWERING 3 isoform X1 [Jatropha curcas]
15 Hb_000599_270 0.1280243284 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta isoform X3 [Jatropha curcas]
16 Hb_002686_230 0.1286875018 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_111552_010 0.1293993727 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
18 Hb_000179_190 0.1296905674 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
19 Hb_006913_020 0.1299531539 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
20 Hb_000806_030 0.1305018459 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]

Gene co-expression network

sample Hb_005116_110 Hb_005116_110 Hb_000103_390 Hb_000103_390 Hb_005116_110--Hb_000103_390 Hb_002157_080 Hb_002157_080 Hb_005116_110--Hb_002157_080 Hb_000169_020 Hb_000169_020 Hb_005116_110--Hb_000169_020 Hb_001776_020 Hb_001776_020 Hb_005116_110--Hb_001776_020 Hb_000103_340 Hb_000103_340 Hb_005116_110--Hb_000103_340 Hb_006275_020 Hb_006275_020 Hb_005116_110--Hb_006275_020 Hb_000103_390--Hb_002157_080 Hb_002542_110 Hb_002542_110 Hb_000103_390--Hb_002542_110 Hb_009658_030 Hb_009658_030 Hb_000103_390--Hb_009658_030 Hb_001488_180 Hb_001488_180 Hb_000103_390--Hb_001488_180 Hb_004435_030 Hb_004435_030 Hb_000103_390--Hb_004435_030 Hb_000015_170 Hb_000015_170 Hb_002157_080--Hb_000015_170 Hb_002157_080--Hb_002542_110 Hb_002157_080--Hb_001488_180 Hb_002157_080--Hb_009658_030 Hb_001473_110 Hb_001473_110 Hb_002157_080--Hb_001473_110 Hb_000347_400 Hb_000347_400 Hb_002157_080--Hb_000347_400 Hb_000340_040 Hb_000340_040 Hb_000169_020--Hb_000340_040 Hb_000139_080 Hb_000139_080 Hb_000169_020--Hb_000139_080 Hb_006100_020 Hb_006100_020 Hb_000169_020--Hb_006100_020 Hb_006913_020 Hb_006913_020 Hb_000169_020--Hb_006913_020 Hb_007413_010 Hb_007413_010 Hb_000169_020--Hb_007413_010 Hb_004324_360 Hb_004324_360 Hb_000169_020--Hb_004324_360 Hb_003498_080 Hb_003498_080 Hb_001776_020--Hb_003498_080 Hb_001481_060 Hb_001481_060 Hb_001776_020--Hb_001481_060 Hb_004531_100 Hb_004531_100 Hb_001776_020--Hb_004531_100 Hb_000212_420 Hb_000212_420 Hb_001776_020--Hb_000212_420 Hb_001776_020--Hb_000103_340 Hb_010315_020 Hb_010315_020 Hb_001776_020--Hb_010315_020 Hb_000214_050 Hb_000214_050 Hb_000103_340--Hb_000214_050 Hb_000635_090 Hb_000635_090 Hb_000103_340--Hb_000635_090 Hb_001018_090 Hb_001018_090 Hb_000103_340--Hb_001018_090 Hb_005214_140 Hb_005214_140 Hb_000103_340--Hb_005214_140 Hb_000103_340--Hb_006275_020 Hb_170416_010 Hb_170416_010 Hb_000103_340--Hb_170416_010 Hb_000120_130 Hb_000120_130 Hb_006275_020--Hb_000120_130 Hb_001500_060 Hb_001500_060 Hb_006275_020--Hb_001500_060 Hb_006275_020--Hb_000015_170 Hb_000061_030 Hb_000061_030 Hb_006275_020--Hb_000061_030 Hb_001761_120 Hb_001761_120 Hb_006275_020--Hb_001761_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.27604 11.3167 9.16037 5.61288 1.78444 8.02578
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.01646 4.36417 5.57211 4.31598 9.75422

CAGE analysis