Hb_000103_390

Information

Type -
Description -
Location Contig103: 337070-338869
Sequence    

Annotation

kegg
ID tcc:TCM_020718
description Pentatricopeptide repeat superfamily protein
nr
ID XP_007034893.1
description Pentatricopeptide repeat superfamily protein [Theobroma cacao]
swissprot
ID Q9FG85
description Pentatricopeptide repeat-containing protein At5g43790 OS=Arabidopsis thaliana GN=PCMP-E30 PE=2 SV=1
trembl
ID A0A061EU55
description Pentatricopeptide repeat superfamily protein OS=Theobroma cacao GN=TCM_020718 PE=4 SV=1
Gene Ontology
ID GO:0008568
description pentatricopeptide repeat-containing protein at5g43790

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01239: 338792-344467
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_390 0.0 - - Pentatricopeptide repeat superfamily protein [Theobroma cacao]
2 Hb_002157_080 0.0915179015 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
3 Hb_002542_110 0.095074545 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
4 Hb_009658_030 0.0997621879 - - PREDICTED: AP-5 complex subunit beta-1 [Jatropha curcas]
5 Hb_001488_180 0.1032226149 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
6 Hb_005116_110 0.1047062681 - - PREDICTED: uncharacterized protein LOC105640215 [Jatropha curcas]
7 Hb_004435_030 0.111319941 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
8 Hb_000347_390 0.1122291728 - - PREDICTED: exportin-T [Jatropha curcas]
9 Hb_000398_100 0.1135385275 - - Uncharacterized protein isoform 2 [Theobroma cacao]
10 Hb_000922_250 0.1143127552 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_008948_020 0.1153976498 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
12 Hb_000640_040 0.1164747188 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
13 Hb_004916_010 0.1168226238 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
14 Hb_001716_040 0.1175752253 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
15 Hb_002686_090 0.1177666464 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
16 Hb_000170_130 0.1187109297 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
17 Hb_007234_010 0.119665781 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
18 Hb_002686_230 0.1203151247 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_006970_050 0.1207365331 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
20 Hb_005977_070 0.1210926625 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000103_390 Hb_000103_390 Hb_002157_080 Hb_002157_080 Hb_000103_390--Hb_002157_080 Hb_002542_110 Hb_002542_110 Hb_000103_390--Hb_002542_110 Hb_009658_030 Hb_009658_030 Hb_000103_390--Hb_009658_030 Hb_001488_180 Hb_001488_180 Hb_000103_390--Hb_001488_180 Hb_005116_110 Hb_005116_110 Hb_000103_390--Hb_005116_110 Hb_004435_030 Hb_004435_030 Hb_000103_390--Hb_004435_030 Hb_000015_170 Hb_000015_170 Hb_002157_080--Hb_000015_170 Hb_002157_080--Hb_002542_110 Hb_002157_080--Hb_001488_180 Hb_002157_080--Hb_009658_030 Hb_001473_110 Hb_001473_110 Hb_002157_080--Hb_001473_110 Hb_000347_400 Hb_000347_400 Hb_002157_080--Hb_000347_400 Hb_000640_040 Hb_000640_040 Hb_002542_110--Hb_000640_040 Hb_010068_080 Hb_010068_080 Hb_002542_110--Hb_010068_080 Hb_001716_040 Hb_001716_040 Hb_002542_110--Hb_001716_040 Hb_002686_090 Hb_002686_090 Hb_002542_110--Hb_002686_090 Hb_002542_110--Hb_001488_180 Hb_005977_070 Hb_005977_070 Hb_009658_030--Hb_005977_070 Hb_002686_230 Hb_002686_230 Hb_009658_030--Hb_002686_230 Hb_002272_030 Hb_002272_030 Hb_009658_030--Hb_002272_030 Hb_066920_030 Hb_066920_030 Hb_009658_030--Hb_066920_030 Hb_009658_030--Hb_004435_030 Hb_001488_180--Hb_001473_110 Hb_000028_130 Hb_000028_130 Hb_001488_180--Hb_000028_130 Hb_000479_070 Hb_000479_070 Hb_001488_180--Hb_000479_070 Hb_004204_010 Hb_004204_010 Hb_001488_180--Hb_004204_010 Hb_010712_050 Hb_010712_050 Hb_001488_180--Hb_010712_050 Hb_000017_220 Hb_000017_220 Hb_001488_180--Hb_000017_220 Hb_005116_110--Hb_002157_080 Hb_000169_020 Hb_000169_020 Hb_005116_110--Hb_000169_020 Hb_001776_020 Hb_001776_020 Hb_005116_110--Hb_001776_020 Hb_000103_340 Hb_000103_340 Hb_005116_110--Hb_000103_340 Hb_006275_020 Hb_006275_020 Hb_005116_110--Hb_006275_020 Hb_112198_010 Hb_112198_010 Hb_004435_030--Hb_112198_010 Hb_004435_030--Hb_001716_040 Hb_008948_020 Hb_008948_020 Hb_004435_030--Hb_008948_020 Hb_004435_030--Hb_000640_040 Hb_005582_040 Hb_005582_040 Hb_004435_030--Hb_005582_040 Hb_001635_120 Hb_001635_120 Hb_004435_030--Hb_001635_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.238569 0.815425 0.422127 0.371365 0.0991469 0.443414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.253842 0.459361 0.45311 0.477262 0.631039

CAGE analysis