Hb_005054_240

Information

Type -
Description -
Location Contig5054: 176331-176916
Sequence    

Annotation

kegg
ID rcu:RCOM_0591780
description hypothetical protein
nr
ID XP_002526861.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SLJ2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0591780 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005054_240 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010815_020 0.2584083993 - - unnamed protein product [Vitis vinifera]
3 Hb_005545_040 0.2673926744 - - PREDICTED: protein LURP-one-related 14 isoform X2 [Nelumbo nucifera]
4 Hb_000172_190 0.2725078119 - - PREDICTED: uncharacterized protein LOC105650824 [Jatropha curcas]
5 Hb_021428_010 0.2763554343 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
6 Hb_003947_040 0.2793111226 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
7 Hb_052764_100 0.2928728742 - - PREDICTED: beta-galactosidase 8-like [Jatropha curcas]
8 Hb_004897_010 0.2981021385 - - -
9 Hb_000286_200 0.3024188783 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
10 Hb_172665_010 0.3045661075 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
11 Hb_006452_230 0.3089642862 - - PREDICTED: uncharacterized protein LOC105635044 [Jatropha curcas]
12 Hb_010672_080 0.3212086717 transcription factor TF Family: MYB hypothetical protein JCGZ_00902 [Jatropha curcas]
13 Hb_003470_060 0.3226368536 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 45 [Jatropha curcas]
14 Hb_002539_020 0.3275481472 - - hypothetical protein CISIN_1g007216mg [Citrus sinensis]
15 Hb_000189_590 0.3279474005 - - PREDICTED: cysteine synthase [Jatropha curcas]
16 Hb_003057_010 0.32880001 - - hypothetical protein JCGZ_06666 [Jatropha curcas]
17 Hb_009078_030 0.3325049443 - - hypothetical protein PRUPE_ppa016992mg, partial [Prunus persica]
18 Hb_000260_740 0.3362372281 - - -
19 Hb_000189_220 0.3368892254 - - -
20 Hb_000031_260 0.3405084502 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]

Gene co-expression network

sample Hb_005054_240 Hb_005054_240 Hb_010815_020 Hb_010815_020 Hb_005054_240--Hb_010815_020 Hb_005545_040 Hb_005545_040 Hb_005054_240--Hb_005545_040 Hb_000172_190 Hb_000172_190 Hb_005054_240--Hb_000172_190 Hb_021428_010 Hb_021428_010 Hb_005054_240--Hb_021428_010 Hb_003947_040 Hb_003947_040 Hb_005054_240--Hb_003947_040 Hb_052764_100 Hb_052764_100 Hb_005054_240--Hb_052764_100 Hb_004897_010 Hb_004897_010 Hb_010815_020--Hb_004897_010 Hb_000286_200 Hb_000286_200 Hb_010815_020--Hb_000286_200 Hb_004870_040 Hb_004870_040 Hb_010815_020--Hb_004870_040 Hb_003098_080 Hb_003098_080 Hb_010815_020--Hb_003098_080 Hb_010815_020--Hb_000172_190 Hb_012022_050 Hb_012022_050 Hb_010815_020--Hb_012022_050 Hb_005545_040--Hb_000286_200 Hb_000012_410 Hb_000012_410 Hb_005545_040--Hb_000012_410 Hb_000011_290 Hb_000011_290 Hb_005545_040--Hb_000011_290 Hb_005545_040--Hb_010815_020 Hb_000061_090 Hb_000061_090 Hb_005545_040--Hb_000061_090 Hb_003057_010 Hb_003057_010 Hb_005545_040--Hb_003057_010 Hb_000828_050 Hb_000828_050 Hb_000172_190--Hb_000828_050 Hb_000031_260 Hb_000031_260 Hb_000172_190--Hb_000031_260 Hb_000172_190--Hb_003947_040 Hb_000345_250 Hb_000345_250 Hb_000172_190--Hb_000345_250 Hb_000172_190--Hb_004897_010 Hb_002529_070 Hb_002529_070 Hb_021428_010--Hb_002529_070 Hb_000260_740 Hb_000260_740 Hb_021428_010--Hb_000260_740 Hb_130250_010 Hb_130250_010 Hb_021428_010--Hb_130250_010 Hb_004021_020 Hb_004021_020 Hb_021428_010--Hb_004021_020 Hb_005288_060 Hb_005288_060 Hb_021428_010--Hb_005288_060 Hb_016835_020 Hb_016835_020 Hb_021428_010--Hb_016835_020 Hb_003947_040--Hb_000061_090 Hb_000879_190 Hb_000879_190 Hb_003947_040--Hb_000879_190 Hb_000675_060 Hb_000675_060 Hb_003947_040--Hb_000675_060 Hb_003947_040--Hb_000828_050 Hb_001699_200 Hb_001699_200 Hb_003947_040--Hb_001699_200 Hb_004218_260 Hb_004218_260 Hb_052764_100--Hb_004218_260 Hb_052764_100--Hb_010815_020 Hb_000203_140 Hb_000203_140 Hb_052764_100--Hb_000203_140 Hb_002360_030 Hb_002360_030 Hb_052764_100--Hb_002360_030 Hb_000837_010 Hb_000837_010 Hb_052764_100--Hb_000837_010 Hb_007054_050 Hb_007054_050 Hb_052764_100--Hb_007054_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0472562 0.218497 0.0576138 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.287284 0.225677 0 0.518088 0.417928

CAGE analysis