Hb_005545_040

Information

Type -
Description -
Location Contig5545: 50620-51626
Sequence    

Annotation

kegg
ID gmx:100799263
description protein LURP-one-related 14-like
nr
ID XP_010256970.1
description PREDICTED: protein LURP-one-related 14 isoform X2 [Nelumbo nucifera]
swissprot
ID Q9LYM3
description Protein LURP-one-related 14 OS=Arabidopsis thaliana GN=At3g56180 PE=2 SV=2
trembl
ID I1M7N5
description Uncharacterized protein OS=Glycine max PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005545_040 0.0 - - PREDICTED: protein LURP-one-related 14 isoform X2 [Nelumbo nucifera]
2 Hb_000286_200 0.1962863439 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
3 Hb_000012_410 0.2316092932 - - PREDICTED: histone deacetylase 2 isoform X1 [Jatropha curcas]
4 Hb_000011_290 0.2368739857 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
5 Hb_010815_020 0.2390018501 - - unnamed protein product [Vitis vinifera]
6 Hb_000061_090 0.2409546422 - - hypothetical protein B456_003G0981001, partial [Gossypium raimondii]
7 Hb_003057_010 0.2437665152 - - hypothetical protein JCGZ_06666 [Jatropha curcas]
8 Hb_002539_020 0.2493942967 - - hypothetical protein CISIN_1g007216mg [Citrus sinensis]
9 Hb_004897_010 0.252594844 - - -
10 Hb_000203_140 0.2579844264 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
11 Hb_003098_080 0.2585550368 - - -
12 Hb_000510_240 0.2586684739 desease resistance Gene Name: PRK ATP binding protein, putative [Ricinus communis]
13 Hb_002131_030 0.2602595525 - - PREDICTED: pyruvate kinase isozyme G, chloroplastic [Jatropha curcas]
14 Hb_000031_260 0.2610273997 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
15 Hb_002233_040 0.2640935628 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
16 Hb_000227_070 0.2654013712 - - PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X2 [Jatropha curcas]
17 Hb_006846_120 0.2665444717 - - Succinate/fumarate mitochondrial transporter, putative [Ricinus communis]
18 Hb_005054_240 0.2673926744 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008948_120 0.2683227737 - - PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]
20 Hb_001452_210 0.2689038111 - - molybdopterin biosynthesis CNX1 protein [Arabidopsis thaliana]

Gene co-expression network

sample Hb_005545_040 Hb_005545_040 Hb_000286_200 Hb_000286_200 Hb_005545_040--Hb_000286_200 Hb_000012_410 Hb_000012_410 Hb_005545_040--Hb_000012_410 Hb_000011_290 Hb_000011_290 Hb_005545_040--Hb_000011_290 Hb_010815_020 Hb_010815_020 Hb_005545_040--Hb_010815_020 Hb_000061_090 Hb_000061_090 Hb_005545_040--Hb_000061_090 Hb_003057_010 Hb_003057_010 Hb_005545_040--Hb_003057_010 Hb_000510_240 Hb_000510_240 Hb_000286_200--Hb_000510_240 Hb_000227_070 Hb_000227_070 Hb_000286_200--Hb_000227_070 Hb_000286_200--Hb_000012_410 Hb_000286_200--Hb_010815_020 Hb_000286_060 Hb_000286_060 Hb_000286_200--Hb_000286_060 Hb_001452_210 Hb_001452_210 Hb_000286_200--Hb_001452_210 Hb_010174_150 Hb_010174_150 Hb_000012_410--Hb_010174_150 Hb_000012_410--Hb_000227_070 Hb_000159_120 Hb_000159_120 Hb_000012_410--Hb_000159_120 Hb_016522_010 Hb_016522_010 Hb_000012_410--Hb_016522_010 Hb_004880_150 Hb_004880_150 Hb_000012_410--Hb_004880_150 Hb_002534_120 Hb_002534_120 Hb_000012_410--Hb_002534_120 Hb_001699_200 Hb_001699_200 Hb_000011_290--Hb_001699_200 Hb_007943_160 Hb_007943_160 Hb_000011_290--Hb_007943_160 Hb_004079_080 Hb_004079_080 Hb_000011_290--Hb_004079_080 Hb_001971_060 Hb_001971_060 Hb_000011_290--Hb_001971_060 Hb_000011_290--Hb_000061_090 Hb_002539_020 Hb_002539_020 Hb_000011_290--Hb_002539_020 Hb_004897_010 Hb_004897_010 Hb_010815_020--Hb_004897_010 Hb_004870_040 Hb_004870_040 Hb_010815_020--Hb_004870_040 Hb_003098_080 Hb_003098_080 Hb_010815_020--Hb_003098_080 Hb_000172_190 Hb_000172_190 Hb_010815_020--Hb_000172_190 Hb_012022_050 Hb_012022_050 Hb_010815_020--Hb_012022_050 Hb_000414_110 Hb_000414_110 Hb_000061_090--Hb_000414_110 Hb_000879_190 Hb_000879_190 Hb_000061_090--Hb_000879_190 Hb_007423_020 Hb_007423_020 Hb_000061_090--Hb_007423_020 Hb_003947_040 Hb_003947_040 Hb_000061_090--Hb_003947_040 Hb_000061_090--Hb_002539_020 Hb_000631_070 Hb_000631_070 Hb_003057_010--Hb_000631_070 Hb_002131_030 Hb_002131_030 Hb_003057_010--Hb_002131_030 Hb_001595_080 Hb_001595_080 Hb_003057_010--Hb_001595_080 Hb_000230_030 Hb_000230_030 Hb_003057_010--Hb_000230_030 Hb_000703_270 Hb_000703_270 Hb_003057_010--Hb_000703_270 Hb_002304_070 Hb_002304_070 Hb_003057_010--Hb_002304_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.276421 0.0578578 0.48347 1.09016 0.734687 0.706262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.4279 3.11821 0.222914 6.08611 2.22401

CAGE analysis