Hb_002983_110

Information

Type -
Description -
Location Contig2983: 102375-106525
Sequence    

Annotation

kegg
ID cit:102625653
description uncharacterized LOC102625653
nr
ID XP_012073083.1
description PREDICTED: uncharacterized protein LOC105634780 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXL0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06066 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31174: 102411-103857 , PASA_asmbl_31175: 103085-103563 , PASA_asmbl_31176: 104147-106507
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002983_110 0.0 - - PREDICTED: uncharacterized protein LOC105634780 [Jatropha curcas]
2 Hb_000923_100 0.1463426893 - - chloride channel clc, putative [Ricinus communis]
3 Hb_000032_510 0.1705070685 - - PREDICTED: SUN domain-containing protein 2 [Jatropha curcas]
4 Hb_000077_160 0.1718864187 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
5 Hb_009189_050 0.1739089886 - - PREDICTED: uncharacterized protein LOC105648080 [Jatropha curcas]
6 Hb_000203_200 0.1789961942 - - Pollen allergen Che a 1 precursor, putative [Ricinus communis]
7 Hb_000922_320 0.1790395443 - - hypothetical protein B456_001G071400 [Gossypium raimondii]
8 Hb_000757_130 0.179300624 - - conserved hypothetical protein [Ricinus communis]
9 Hb_032568_010 0.1801245287 - - PREDICTED: protein phosphatase 2C 56-like [Jatropha curcas]
10 Hb_031022_020 0.1803123578 - - -
11 Hb_002343_010 0.1838000688 - - amino acid binding protein, putative [Ricinus communis]
12 Hb_018790_050 0.1869993193 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
13 Hb_054865_050 0.1928125064 - - calcium-dependent protein kinase, putative [Ricinus communis]
14 Hb_001898_130 0.193072204 - - ATP binding protein, putative [Ricinus communis]
15 Hb_004679_040 0.1932537271 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
16 Hb_002325_060 0.1942106975 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]
17 Hb_031822_010 0.1958479139 - - PREDICTED: uncharacterized protein LOC103496015 [Cucumis melo]
18 Hb_000046_310 0.1962413539 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
19 Hb_101146_010 0.1963301305 - - PREDICTED: peregrin-like [Jatropha curcas]
20 Hb_000057_130 0.1966310124 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]

Gene co-expression network

sample Hb_002983_110 Hb_002983_110 Hb_000923_100 Hb_000923_100 Hb_002983_110--Hb_000923_100 Hb_000032_510 Hb_000032_510 Hb_002983_110--Hb_000032_510 Hb_000077_160 Hb_000077_160 Hb_002983_110--Hb_000077_160 Hb_009189_050 Hb_009189_050 Hb_002983_110--Hb_009189_050 Hb_000203_200 Hb_000203_200 Hb_002983_110--Hb_000203_200 Hb_000922_320 Hb_000922_320 Hb_002983_110--Hb_000922_320 Hb_009862_020 Hb_009862_020 Hb_000923_100--Hb_009862_020 Hb_000923_100--Hb_000077_160 Hb_002835_280 Hb_002835_280 Hb_000923_100--Hb_002835_280 Hb_000336_180 Hb_000336_180 Hb_000923_100--Hb_000336_180 Hb_000923_100--Hb_000203_200 Hb_121089_020 Hb_121089_020 Hb_000923_100--Hb_121089_020 Hb_000032_510--Hb_002835_280 Hb_005731_100 Hb_005731_100 Hb_000032_510--Hb_005731_100 Hb_005305_120 Hb_005305_120 Hb_000032_510--Hb_005305_120 Hb_001124_140 Hb_001124_140 Hb_000032_510--Hb_001124_140 Hb_000227_280 Hb_000227_280 Hb_000032_510--Hb_000227_280 Hb_001433_150 Hb_001433_150 Hb_000032_510--Hb_001433_150 Hb_000371_120 Hb_000371_120 Hb_000077_160--Hb_000371_120 Hb_003849_190 Hb_003849_190 Hb_000077_160--Hb_003849_190 Hb_000028_430 Hb_000028_430 Hb_000077_160--Hb_000028_430 Hb_000110_260 Hb_000110_260 Hb_000077_160--Hb_000110_260 Hb_002078_290 Hb_002078_290 Hb_000077_160--Hb_002078_290 Hb_009189_050--Hb_000371_120 Hb_001474_050 Hb_001474_050 Hb_009189_050--Hb_001474_050 Hb_002343_010 Hb_002343_010 Hb_009189_050--Hb_002343_010 Hb_009189_050--Hb_000077_160 Hb_002759_260 Hb_002759_260 Hb_009189_050--Hb_002759_260 Hb_003209_090 Hb_003209_090 Hb_009189_050--Hb_003209_090 Hb_000203_200--Hb_000922_320 Hb_000327_200 Hb_000327_200 Hb_000203_200--Hb_000327_200 Hb_002281_010 Hb_002281_010 Hb_000203_200--Hb_002281_010 Hb_000979_140 Hb_000979_140 Hb_000203_200--Hb_000979_140 Hb_004052_110 Hb_004052_110 Hb_000203_200--Hb_004052_110 Hb_029253_010 Hb_029253_010 Hb_000922_320--Hb_029253_010 Hb_000000_480 Hb_000000_480 Hb_000922_320--Hb_000000_480 Hb_002235_060 Hb_002235_060 Hb_000922_320--Hb_002235_060 Hb_002325_060 Hb_002325_060 Hb_000922_320--Hb_002325_060 Hb_000757_130 Hb_000757_130 Hb_000922_320--Hb_000757_130 Hb_012762_040 Hb_012762_040 Hb_000922_320--Hb_012762_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.379586 8.83108 10.3543 7.98505 0.0575139 0.0821633
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.52059 3.81206 1.33078 1.6167 5.54912

CAGE analysis