Hb_002073_010

Information

Type -
Description -
Location Contig2073: 6289-9226
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21366: 6968-7070 , PASA_asmbl_21367: 7298-9457 , PASA_asmbl_21368: 7662-9154
cDNA
(Sanger)
(ID:Location)		 052_J16.ab1: 7298-9457

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002073_010 0.0 - - -
2 Hb_000016_060 0.1509094909 - - mads box protein, putative [Ricinus communis]
3 Hb_001208_040 0.1533488008 - - hypothetical protein CISIN_1g025613mg [Citrus sinensis]
4 Hb_004669_030 0.1629561213 - - -
5 Hb_000603_070 0.1771853751 - - -
6 Hb_000004_010 0.1821496658 - - hypothetical protein Csa_6G120400 [Cucumis sativus]
7 Hb_090158_010 0.18601483 - - hypothetical protein RCOM_1968400 [Ricinus communis]
8 Hb_000656_190 0.1878264701 - - PREDICTED: probable nucleoside diphosphate kinase 5 [Jatropha curcas]
9 Hb_001233_020 0.1901164537 - - hypothetical protein JCGZ_04109 [Jatropha curcas]
10 Hb_006153_030 0.1907451971 - - PREDICTED: probable transaldolase [Jatropha curcas]
11 Hb_002562_110 0.1940972398 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
12 Hb_001208_030 0.1991193135 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007943_200 0.2018585341 - - Uncharacterized protein isoform 2 [Theobroma cacao]
14 Hb_000635_070 0.204780016 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
15 Hb_000023_290 0.2051272602 - - steroid binding protein, putative [Ricinus communis]
16 Hb_009270_030 0.2065166579 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
17 Hb_002960_130 0.2070037443 - - hypothetical protein B456_008G036100 [Gossypium raimondii]
18 Hb_007390_020 0.2088741133 - - PREDICTED: protein FMP32, mitochondrial-like [Populus euphratica]
19 Hb_001747_030 0.20996764 - - hypothetical protein F383_08210 [Gossypium arboreum]
20 Hb_182713_020 0.2112468168 - - PREDICTED: vesicle-associated membrane protein 727 [Setaria italica]

Gene co-expression network

sample Hb_002073_010 Hb_002073_010 Hb_000016_060 Hb_000016_060 Hb_002073_010--Hb_000016_060 Hb_001208_040 Hb_001208_040 Hb_002073_010--Hb_001208_040 Hb_004669_030 Hb_004669_030 Hb_002073_010--Hb_004669_030 Hb_000603_070 Hb_000603_070 Hb_002073_010--Hb_000603_070 Hb_000004_010 Hb_000004_010 Hb_002073_010--Hb_000004_010 Hb_090158_010 Hb_090158_010 Hb_002073_010--Hb_090158_010 Hb_001969_020 Hb_001969_020 Hb_000016_060--Hb_001969_020 Hb_000023_290 Hb_000023_290 Hb_000016_060--Hb_000023_290 Hb_148130_020 Hb_148130_020 Hb_000016_060--Hb_148130_020 Hb_006153_030 Hb_006153_030 Hb_000016_060--Hb_006153_030 Hb_002562_110 Hb_002562_110 Hb_000016_060--Hb_002562_110 Hb_002960_130 Hb_002960_130 Hb_000016_060--Hb_002960_130 Hb_001208_030 Hb_001208_030 Hb_001208_040--Hb_001208_030 Hb_001208_040--Hb_002960_130 Hb_000217_020 Hb_000217_020 Hb_001208_040--Hb_000217_020 Hb_001208_040--Hb_000016_060 Hb_006452_110 Hb_006452_110 Hb_001208_040--Hb_006452_110 Hb_007390_020 Hb_007390_020 Hb_001208_040--Hb_007390_020 Hb_000671_120 Hb_000671_120 Hb_004669_030--Hb_000671_120 Hb_000635_070 Hb_000635_070 Hb_004669_030--Hb_000635_070 Hb_001233_020 Hb_001233_020 Hb_004669_030--Hb_001233_020 Hb_132180_010 Hb_132180_010 Hb_004669_030--Hb_132180_010 Hb_001220_010 Hb_001220_010 Hb_004669_030--Hb_001220_010 Hb_004669_030--Hb_002562_110 Hb_000215_310 Hb_000215_310 Hb_000603_070--Hb_000215_310 Hb_000603_070--Hb_000016_060 Hb_000603_070--Hb_148130_020 Hb_000125_020 Hb_000125_020 Hb_000603_070--Hb_000125_020 Hb_000168_010 Hb_000168_010 Hb_000603_070--Hb_000168_010 Hb_007943_200 Hb_007943_200 Hb_000603_070--Hb_007943_200 Hb_000720_080 Hb_000720_080 Hb_000004_010--Hb_000720_080 Hb_001747_030 Hb_001747_030 Hb_000004_010--Hb_001747_030 Hb_000004_010--Hb_000016_060 Hb_000004_010--Hb_007390_020 Hb_005527_020 Hb_005527_020 Hb_000004_010--Hb_005527_020 Hb_003669_010 Hb_003669_010 Hb_000004_010--Hb_003669_010 Hb_075764_010 Hb_075764_010 Hb_090158_010--Hb_075764_010 Hb_099878_050 Hb_099878_050 Hb_090158_010--Hb_099878_050 Hb_085972_010 Hb_085972_010 Hb_090158_010--Hb_085972_010 Hb_088163_010 Hb_088163_010 Hb_090158_010--Hb_088163_010 Hb_146675_010 Hb_146675_010 Hb_090158_010--Hb_146675_010 Hb_129672_010 Hb_129672_010 Hb_090158_010--Hb_129672_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.197703 0.095182 0.706174 4.1419 0.806371 1.303
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.42938 1.83761 0.173643 1.22855 0.383363

CAGE analysis