Hb_002016_180

Information

Type -
Description -
Location Contig2016: 162876-166654
Sequence    

Annotation

kegg
ID rcu:RCOM_1177940
description beta-glucosidase, putative (EC:3.2.1.21)
nr
ID XP_002523070.1
description beta-glucosidase, putative [Ricinus communis]
swissprot
ID B3H5Q1
description Beta-glucosidase 11 OS=Arabidopsis thaliana GN=BGLU11 PE=2 SV=2
trembl
ID B9SAQ1
description Beta-glucosidase, putative OS=Ricinus communis GN=RCOM_1177940 PE=3 SV=1
Gene Ontology
ID GO:0008422
description beta-glucosidase 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20520: 163016-166499
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002016_180 0.0 - - beta-glucosidase, putative [Ricinus communis]
2 Hb_065133_010 0.2582369087 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
3 Hb_000803_310 0.2588268835 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105648332 isoform X1 [Jatropha curcas]
4 Hb_001840_110 0.2628464737 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
5 Hb_001481_010 0.2630147153 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
6 Hb_006269_030 0.2633034311 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
7 Hb_000996_160 0.2636726915 - - conserved hypothetical protein [Ricinus communis]
8 Hb_046998_010 0.2654168149 desease resistance Gene Name: LRR_4 Disease resistance protein RPM1, putative [Ricinus communis]
9 Hb_004064_060 0.2661650976 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000117_140 0.2681293002 - - hypothetical protein CISIN_1g042884mg, partial [Citrus sinensis]
11 Hb_000834_050 0.2682247924 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 isoform X2 [Populus euphratica]
12 Hb_004635_070 0.2808880423 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Solanum lycopersicum]
13 Hb_007290_070 0.2830299871 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
14 Hb_001195_140 0.2873760638 - - PREDICTED: U-box domain-containing protein 5-like [Jatropha curcas]
15 Hb_012033_010 0.2886163503 - - PREDICTED: histone H1.2-like [Jatropha curcas]
16 Hb_002893_190 0.2886926389 - - unnamed protein product [Coffea canephora]
17 Hb_006681_030 0.2898324199 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Populus euphratica]
18 Hb_000454_150 0.2944459107 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
19 Hb_175841_010 0.2973906736 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
20 Hb_001675_100 0.2979321175 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002016_180 Hb_002016_180 Hb_065133_010 Hb_065133_010 Hb_002016_180--Hb_065133_010 Hb_000803_310 Hb_000803_310 Hb_002016_180--Hb_000803_310 Hb_001840_110 Hb_001840_110 Hb_002016_180--Hb_001840_110 Hb_001481_010 Hb_001481_010 Hb_002016_180--Hb_001481_010 Hb_006269_030 Hb_006269_030 Hb_002016_180--Hb_006269_030 Hb_000996_160 Hb_000996_160 Hb_002016_180--Hb_000996_160 Hb_001294_040 Hb_001294_040 Hb_065133_010--Hb_001294_040 Hb_004411_050 Hb_004411_050 Hb_065133_010--Hb_004411_050 Hb_001158_120 Hb_001158_120 Hb_065133_010--Hb_001158_120 Hb_005016_080 Hb_005016_080 Hb_065133_010--Hb_005016_080 Hb_002361_010 Hb_002361_010 Hb_065133_010--Hb_002361_010 Hb_000809_140 Hb_000809_140 Hb_065133_010--Hb_000809_140 Hb_163430_010 Hb_163430_010 Hb_000803_310--Hb_163430_010 Hb_005675_060 Hb_005675_060 Hb_000803_310--Hb_005675_060 Hb_000803_310--Hb_001481_010 Hb_005724_050 Hb_005724_050 Hb_000803_310--Hb_005724_050 Hb_000058_050 Hb_000058_050 Hb_000803_310--Hb_000058_050 Hb_000834_050 Hb_000834_050 Hb_000803_310--Hb_000834_050 Hb_001195_140 Hb_001195_140 Hb_001840_110--Hb_001195_140 Hb_004096_220 Hb_004096_220 Hb_001840_110--Hb_004096_220 Hb_083078_010 Hb_083078_010 Hb_001840_110--Hb_083078_010 Hb_004064_060 Hb_004064_060 Hb_001840_110--Hb_004064_060 Hb_073973_020 Hb_073973_020 Hb_001840_110--Hb_073973_020 Hb_000008_430 Hb_000008_430 Hb_001840_110--Hb_000008_430 Hb_001079_030 Hb_001079_030 Hb_001481_010--Hb_001079_030 Hb_006694_030 Hb_006694_030 Hb_001481_010--Hb_006694_030 Hb_001481_010--Hb_000058_050 Hb_001409_050 Hb_001409_050 Hb_001481_010--Hb_001409_050 Hb_001481_010--Hb_000834_050 Hb_170878_070 Hb_170878_070 Hb_006269_030--Hb_170878_070 Hb_009486_120 Hb_009486_120 Hb_006269_030--Hb_009486_120 Hb_134174_010 Hb_134174_010 Hb_006269_030--Hb_134174_010 Hb_006681_030 Hb_006681_030 Hb_006269_030--Hb_006681_030 Hb_001226_100 Hb_001226_100 Hb_006269_030--Hb_001226_100 Hb_009296_060 Hb_009296_060 Hb_006269_030--Hb_009296_060 Hb_007290_070 Hb_007290_070 Hb_000996_160--Hb_007290_070 Hb_000996_160--Hb_083078_010 Hb_001499_070 Hb_001499_070 Hb_000996_160--Hb_001499_070 Hb_001408_020 Hb_001408_020 Hb_000996_160--Hb_001408_020 Hb_001821_060 Hb_001821_060 Hb_000996_160--Hb_001821_060 Hb_002809_160 Hb_002809_160 Hb_000996_160--Hb_002809_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.05117 43.4669 107.182 11.7154 66.8112 5.98977
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.385404 0.17557 1.54742 86.5255 69.9441

CAGE analysis