Hb_001882_060

Information

Type -
Description -
Location Contig1882: 88226-91146
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001882_060 0.0 - - -
2 Hb_019219_020 0.2851689705 - - profilin-1 [Jatropha curcas]
3 Hb_000529_230 0.2919167773 - - PREDICTED: putative leucine-rich repeat-containing protein DDB_G0290503 [Prunus mume]
4 Hb_000031_090 0.3064453112 - - PREDICTED: pentatricopeptide repeat-containing protein At5g10690 [Jatropha curcas]
5 Hb_000173_100 0.3243056165 - - -
6 Hb_005649_020 0.3269591961 - - PREDICTED: serine carboxypeptidase-like 25 [Jatropha curcas]
7 Hb_017845_010 0.3327857016 - - -
8 Hb_004586_200 0.3382968467 - - PREDICTED: cyclin-D3-1-like [Jatropha curcas]
9 Hb_005725_260 0.3399424034 - - squalene monooxygenase [Jatropha curcas]
10 Hb_000720_160 0.3403138568 - - PREDICTED: C2 domain-containing protein At1g63220 [Jatropha curcas]
11 Hb_001221_560 0.3445974823 - - PREDICTED: 11-beta-hydroxysteroid dehydrogenase 1B-like [Jatropha curcas]
12 Hb_111722_010 0.3469185339 - - PREDICTED: uncharacterized protein LOC105634044 isoform X2 [Jatropha curcas]
13 Hb_002232_130 0.3471129245 - - -
14 Hb_001204_020 0.3490459188 - - Uncharacterized protein TCM_021965 [Theobroma cacao]
15 Hb_067096_010 0.3491412592 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
16 Hb_019516_020 0.3499782572 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002447_130 0.350754679 - - -
18 Hb_006059_020 0.3508968558 - - PREDICTED: uncharacterized protein LOC105648672 [Jatropha curcas]
19 Hb_002338_060 0.3518147722 - - 2Fe-2S ferredoxin [Glycine soja]
20 Hb_006816_220 0.3518807965 - - PREDICTED: zinc finger matrin-type protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001882_060 Hb_001882_060 Hb_019219_020 Hb_019219_020 Hb_001882_060--Hb_019219_020 Hb_000529_230 Hb_000529_230 Hb_001882_060--Hb_000529_230 Hb_000031_090 Hb_000031_090 Hb_001882_060--Hb_000031_090 Hb_000173_100 Hb_000173_100 Hb_001882_060--Hb_000173_100 Hb_005649_020 Hb_005649_020 Hb_001882_060--Hb_005649_020 Hb_017845_010 Hb_017845_010 Hb_001882_060--Hb_017845_010 Hb_030565_080 Hb_030565_080 Hb_019219_020--Hb_030565_080 Hb_027760_010 Hb_027760_010 Hb_019219_020--Hb_027760_010 Hb_002338_060 Hb_002338_060 Hb_019219_020--Hb_002338_060 Hb_004374_060 Hb_004374_060 Hb_019219_020--Hb_004374_060 Hb_019516_020 Hb_019516_020 Hb_019219_020--Hb_019516_020 Hb_019219_020--Hb_000173_100 Hb_028227_030 Hb_028227_030 Hb_000529_230--Hb_028227_030 Hb_000529_230--Hb_005649_020 Hb_000529_230--Hb_002338_060 Hb_000028_040 Hb_000028_040 Hb_000529_230--Hb_000028_040 Hb_005228_110 Hb_005228_110 Hb_000529_230--Hb_005228_110 Hb_011004_020 Hb_011004_020 Hb_000529_230--Hb_011004_020 Hb_158092_030 Hb_158092_030 Hb_000031_090--Hb_158092_030 Hb_000723_100 Hb_000723_100 Hb_000031_090--Hb_000723_100 Hb_005433_010 Hb_005433_010 Hb_000031_090--Hb_005433_010 Hb_029695_110 Hb_029695_110 Hb_000031_090--Hb_029695_110 Hb_001097_100 Hb_001097_100 Hb_000031_090--Hb_001097_100 Hb_005276_130 Hb_005276_130 Hb_000031_090--Hb_005276_130 Hb_000173_100--Hb_004374_060 Hb_003001_100 Hb_003001_100 Hb_000173_100--Hb_003001_100 Hb_004128_210 Hb_004128_210 Hb_000173_100--Hb_004128_210 Hb_000720_160 Hb_000720_160 Hb_000173_100--Hb_000720_160 Hb_002685_180 Hb_002685_180 Hb_000173_100--Hb_002685_180 Hb_003666_030 Hb_003666_030 Hb_005649_020--Hb_003666_030 Hb_001427_200 Hb_001427_200 Hb_005649_020--Hb_001427_200 Hb_006694_020 Hb_006694_020 Hb_005649_020--Hb_006694_020 Hb_005649_020--Hb_000031_090 Hb_003336_030 Hb_003336_030 Hb_005649_020--Hb_003336_030 Hb_001476_070 Hb_001476_070 Hb_005649_020--Hb_001476_070 Hb_001823_060 Hb_001823_060 Hb_017845_010--Hb_001823_060 Hb_000116_360 Hb_000116_360 Hb_017845_010--Hb_000116_360 Hb_002613_010 Hb_002613_010 Hb_017845_010--Hb_002613_010 Hb_000723_340 Hb_000723_340 Hb_017845_010--Hb_000723_340 Hb_007894_050 Hb_007894_050 Hb_017845_010--Hb_007894_050 Hb_000056_070 Hb_000056_070 Hb_017845_010--Hb_000056_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0296199 0 0.0459499 0.0275698 0.170631 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.136329 0.107194 0 0.0433996 0.107508

CAGE analysis