Hb_000529_230

Information

Type -
Description -
Location Contig529: 297755-306826
Sequence    

Annotation

kegg
ID pmum:103334981
description putative leucine-rich repeat-containing protein DDB_G0290503
nr
ID XP_008236191.1
description PREDICTED: putative leucine-rich repeat-containing protein DDB_G0290503 [Prunus mume]
swissprot
ID F4IJK1
description Protein NETWORKED 2D OS=Arabidopsis thaliana GN=NET2D PE=3 SV=1
trembl
ID M5W3U3
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026542mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000529_230 0.0 - - PREDICTED: putative leucine-rich repeat-containing protein DDB_G0290503 [Prunus mume]
2 Hb_028227_030 0.2398179884 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
3 Hb_005649_020 0.2557344399 - - PREDICTED: serine carboxypeptidase-like 25 [Jatropha curcas]
4 Hb_002338_060 0.258890988 - - 2Fe-2S ferredoxin [Glycine soja]
5 Hb_000028_040 0.2738675272 - - PREDICTED: prostaglandin E synthase 2-like [Jatropha curcas]
6 Hb_005228_110 0.2832474379 - - Cleavage and polyadenylation specificity factor subunit 3 [Fukomys damarensis]
7 Hb_011004_020 0.2874191837 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
8 Hb_028872_050 0.288261177 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
9 Hb_001882_060 0.2919167773 - - -
10 Hb_003666_030 0.2961250791 - - Thiol:disulfide interchange protein txlA, putative [Ricinus communis]
11 Hb_011214_050 0.2961269289 - - phytoene synthase 2 [Manihot esculenta]
12 Hb_000031_090 0.3001047815 - - PREDICTED: pentatricopeptide repeat-containing protein At5g10690 [Jatropha curcas]
13 Hb_044187_010 0.3003637536 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
14 Hb_000268_090 0.3032245363 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
15 Hb_019219_020 0.3042579276 - - profilin-1 [Jatropha curcas]
16 Hb_031421_010 0.3052142467 - - PREDICTED: copper chaperone for superoxide dismutase, chloroplastic/cytosolic [Jatropha curcas]
17 Hb_068804_100 0.3111171748 - - PREDICTED: surfeit locus protein 6 [Jatropha curcas]
18 Hb_001703_030 0.3137957616 transcription factor TF Family: SET Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis]
19 Hb_001546_060 0.3143422213 - - PREDICTED: uncharacterized protein LOC105133943 isoform X4 [Populus euphratica]
20 Hb_001811_160 0.3145558309 - - PREDICTED: probable glycosyltransferase At5g03795 [Eucalyptus grandis]

Gene co-expression network

sample Hb_000529_230 Hb_000529_230 Hb_028227_030 Hb_028227_030 Hb_000529_230--Hb_028227_030 Hb_005649_020 Hb_005649_020 Hb_000529_230--Hb_005649_020 Hb_002338_060 Hb_002338_060 Hb_000529_230--Hb_002338_060 Hb_000028_040 Hb_000028_040 Hb_000529_230--Hb_000028_040 Hb_005228_110 Hb_005228_110 Hb_000529_230--Hb_005228_110 Hb_011004_020 Hb_011004_020 Hb_000529_230--Hb_011004_020 Hb_012799_180 Hb_012799_180 Hb_028227_030--Hb_012799_180 Hb_005016_090 Hb_005016_090 Hb_028227_030--Hb_005016_090 Hb_028227_030--Hb_000028_040 Hb_001832_190 Hb_001832_190 Hb_028227_030--Hb_001832_190 Hb_028227_030--Hb_002338_060 Hb_001629_110 Hb_001629_110 Hb_028227_030--Hb_001629_110 Hb_003666_030 Hb_003666_030 Hb_005649_020--Hb_003666_030 Hb_001427_200 Hb_001427_200 Hb_005649_020--Hb_001427_200 Hb_006694_020 Hb_006694_020 Hb_005649_020--Hb_006694_020 Hb_000031_090 Hb_000031_090 Hb_005649_020--Hb_000031_090 Hb_003336_030 Hb_003336_030 Hb_005649_020--Hb_003336_030 Hb_001476_070 Hb_001476_070 Hb_005649_020--Hb_001476_070 Hb_000265_240 Hb_000265_240 Hb_002338_060--Hb_000265_240 Hb_000377_070 Hb_000377_070 Hb_002338_060--Hb_000377_070 Hb_007763_040 Hb_007763_040 Hb_002338_060--Hb_007763_040 Hb_030565_080 Hb_030565_080 Hb_002338_060--Hb_030565_080 Hb_001234_080 Hb_001234_080 Hb_002338_060--Hb_001234_080 Hb_129924_010 Hb_129924_010 Hb_002338_060--Hb_129924_010 Hb_004512_020 Hb_004512_020 Hb_000028_040--Hb_004512_020 Hb_003656_110 Hb_003656_110 Hb_000028_040--Hb_003656_110 Hb_002872_020 Hb_002872_020 Hb_000028_040--Hb_002872_020 Hb_011344_010 Hb_011344_010 Hb_000028_040--Hb_011344_010 Hb_001427_170 Hb_001427_170 Hb_000028_040--Hb_001427_170 Hb_000352_110 Hb_000352_110 Hb_000028_040--Hb_000352_110 Hb_028872_050 Hb_028872_050 Hb_005228_110--Hb_028872_050 Hb_005228_110--Hb_000028_040 Hb_005228_110--Hb_002872_020 Hb_001959_050 Hb_001959_050 Hb_005228_110--Hb_001959_050 Hb_034083_010 Hb_034083_010 Hb_005228_110--Hb_034083_010 Hb_000932_100 Hb_000932_100 Hb_005228_110--Hb_000932_100 Hb_001322_170 Hb_001322_170 Hb_011004_020--Hb_001322_170 Hb_011004_020--Hb_000028_040 Hb_001369_370 Hb_001369_370 Hb_011004_020--Hb_001369_370 Hb_011004_020--Hb_003656_110 Hb_000883_030 Hb_000883_030 Hb_011004_020--Hb_000883_030 Hb_019516_030 Hb_019516_030 Hb_011004_020--Hb_019516_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.105772 0.00544766 0.39818 0.0705817 2.02252 0.229289
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.812299 1.06212 0.452488 0.109133 1.11474

CAGE analysis