Hb_028227_030

Information

Type -
Description -
Location Contig28227: 25921-29294
Sequence    

Annotation

kegg
ID tcc:TCM_008816
description hypothetical protein
nr
ID XP_012085684.1
description PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JSF4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17965 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29570: 26045-29224
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028227_030 0.0 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
2 Hb_012799_180 0.1373546453 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Vitis vinifera]
3 Hb_005016_090 0.1393616536 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
4 Hb_000028_040 0.1476752524 - - PREDICTED: prostaglandin E synthase 2-like [Jatropha curcas]
5 Hb_001832_190 0.1502246349 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002338_060 0.1528054903 - - 2Fe-2S ferredoxin [Glycine soja]
7 Hb_001629_110 0.153818209 - - PREDICTED: uncharacterized protein LOC105632808 [Jatropha curcas]
8 Hb_068804_100 0.1564563067 - - PREDICTED: surfeit locus protein 6 [Jatropha curcas]
9 Hb_005834_020 0.1568127189 - - PREDICTED: BTB/POZ domain-containing protein At1g30440 isoform X1 [Jatropha curcas]
10 Hb_028900_010 0.1574103649 - - PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]
11 Hb_001703_030 0.1577060458 transcription factor TF Family: SET Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis]
12 Hb_007763_040 0.1600626637 - - -
13 Hb_008785_040 0.1605185578 - - PREDICTED: DNA repair protein UVH3 [Jatropha curcas]
14 Hb_008554_030 0.1616471591 - - PREDICTED: dnaJ homolog 1, mitochondrial-like [Jatropha curcas]
15 Hb_011867_010 0.1658178408 - - PREDICTED: uncharacterized protein LOC105641409 [Jatropha curcas]
16 Hb_003086_070 0.1670951782 - - PREDICTED: iron-sulfur cluster co-chaperone protein HscB, mitochondrial [Jatropha curcas]
17 Hb_001019_190 0.1689420553 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002154_120 0.1690662255 - - PREDICTED: uncharacterized protein LOC105630563 [Jatropha curcas]
19 Hb_002963_020 0.1703978966 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002681_070 0.1707380916 - - PREDICTED: uncharacterized protein LOC105633833 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_028227_030 Hb_028227_030 Hb_012799_180 Hb_012799_180 Hb_028227_030--Hb_012799_180 Hb_005016_090 Hb_005016_090 Hb_028227_030--Hb_005016_090 Hb_000028_040 Hb_000028_040 Hb_028227_030--Hb_000028_040 Hb_001832_190 Hb_001832_190 Hb_028227_030--Hb_001832_190 Hb_002338_060 Hb_002338_060 Hb_028227_030--Hb_002338_060 Hb_001629_110 Hb_001629_110 Hb_028227_030--Hb_001629_110 Hb_001703_030 Hb_001703_030 Hb_012799_180--Hb_001703_030 Hb_085781_010 Hb_085781_010 Hb_012799_180--Hb_085781_010 Hb_011867_010 Hb_011867_010 Hb_012799_180--Hb_011867_010 Hb_008554_030 Hb_008554_030 Hb_012799_180--Hb_008554_030 Hb_017904_010 Hb_017904_010 Hb_012799_180--Hb_017904_010 Hb_001776_140 Hb_001776_140 Hb_012799_180--Hb_001776_140 Hb_010368_020 Hb_010368_020 Hb_005016_090--Hb_010368_020 Hb_001564_130 Hb_001564_130 Hb_005016_090--Hb_001564_130 Hb_007763_040 Hb_007763_040 Hb_005016_090--Hb_007763_040 Hb_002346_020 Hb_002346_020 Hb_005016_090--Hb_002346_020 Hb_001586_040 Hb_001586_040 Hb_005016_090--Hb_001586_040 Hb_003683_050 Hb_003683_050 Hb_005016_090--Hb_003683_050 Hb_004512_020 Hb_004512_020 Hb_000028_040--Hb_004512_020 Hb_003656_110 Hb_003656_110 Hb_000028_040--Hb_003656_110 Hb_002872_020 Hb_002872_020 Hb_000028_040--Hb_002872_020 Hb_011344_010 Hb_011344_010 Hb_000028_040--Hb_011344_010 Hb_001427_170 Hb_001427_170 Hb_000028_040--Hb_001427_170 Hb_000352_110 Hb_000352_110 Hb_000028_040--Hb_000352_110 Hb_006130_010 Hb_006130_010 Hb_001832_190--Hb_006130_010 Hb_000922_330 Hb_000922_330 Hb_001832_190--Hb_000922_330 Hb_014720_160 Hb_014720_160 Hb_001832_190--Hb_014720_160 Hb_000085_060 Hb_000085_060 Hb_001832_190--Hb_000085_060 Hb_001350_010 Hb_001350_010 Hb_001832_190--Hb_001350_010 Hb_000567_360 Hb_000567_360 Hb_001832_190--Hb_000567_360 Hb_000265_240 Hb_000265_240 Hb_002338_060--Hb_000265_240 Hb_000377_070 Hb_000377_070 Hb_002338_060--Hb_000377_070 Hb_002338_060--Hb_007763_040 Hb_030565_080 Hb_030565_080 Hb_002338_060--Hb_030565_080 Hb_001234_080 Hb_001234_080 Hb_002338_060--Hb_001234_080 Hb_129924_010 Hb_129924_010 Hb_002338_060--Hb_129924_010 Hb_007576_040 Hb_007576_040 Hb_001629_110--Hb_007576_040 Hb_000046_280 Hb_000046_280 Hb_001629_110--Hb_000046_280 Hb_001512_060 Hb_001512_060 Hb_001629_110--Hb_001512_060 Hb_000015_080 Hb_000015_080 Hb_001629_110--Hb_000015_080 Hb_063716_050 Hb_063716_050 Hb_001629_110--Hb_063716_050 Hb_012675_090 Hb_012675_090 Hb_001629_110--Hb_012675_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7603 3.57593 5.86811 4.16997 27.0918 9.34253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.78055 18.8091 9.73732 2.44964 14.244

CAGE analysis