Hb_001824_040

Information

Type -
Description -
Location Contig1824: 35561-37827
Sequence    

Annotation

kegg
ID dosa:Os02t0452500-01
description Os02g0452500; Similar to SNARE-interacting protein KEULE.
nr
ID EPS63425.1
description hypothetical protein M569_11359, partial [Genlisea aurea]
swissprot
ID P34815
description Putative acetylcholine regulator unc-18 OS=Caenorhabditis elegans GN=unc-18 PE=2 SV=3
trembl
ID K4AZ69
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc01g091290.2 PE=4 SV=1
Gene Ontology
ID GO:0005623
description protein transport sec1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001824_040 0.0 - - hypothetical protein M569_11359, partial [Genlisea aurea]
2 Hb_012760_050 0.1444285379 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]
3 Hb_004525_040 0.1641334824 - - PREDICTED: sugar transporter ERD6-like 6 [Jatropha curcas]
4 Hb_001894_070 0.1687164412 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X1 [Jatropha curcas]
5 Hb_000107_110 0.1700498191 - - nucleic acid binding protein, putative [Ricinus communis]
6 Hb_000671_130 0.1702007778 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
7 Hb_000008_190 0.1703752702 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
8 Hb_030992_010 0.1725025864 - - acetylornithine aminotransferase, putative [Ricinus communis]
9 Hb_002133_020 0.1752464024 - - conserved hypothetical protein [Ricinus communis]
10 Hb_122636_010 0.1797228086 - - dienelactone hydrolase family protein [Populus trichocarpa]
11 Hb_000796_020 0.1811065311 - - ADP-ribosylation factor [Phaseolus vulgaris]
12 Hb_000062_090 0.1832223007 - - PREDICTED: uncharacterized protein LOC105644743 isoform X2 [Jatropha curcas]
13 Hb_001481_150 0.183518524 - - hypothetical protein POPTR_0001s15440g [Populus trichocarpa]
14 Hb_005701_120 0.1841895805 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
15 Hb_048476_060 0.1846538437 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
16 Hb_000165_080 0.1873425337 - - PREDICTED: multiple inositol polyphosphate phosphatase 1 isoform X1 [Jatropha curcas]
17 Hb_033152_070 0.1874052168 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
18 Hb_000035_330 0.1891574888 - - Transmembrane protein 85 [Theobroma cacao]
19 Hb_010042_020 0.1894653477 - - UDP-n-acteylglucosamine pyrophosphorylase, putative [Ricinus communis]
20 Hb_000177_110 0.1909285204 - - PREDICTED: uncharacterized protein LOC105642063 [Jatropha curcas]

Gene co-expression network

sample Hb_001824_040 Hb_001824_040 Hb_012760_050 Hb_012760_050 Hb_001824_040--Hb_012760_050 Hb_004525_040 Hb_004525_040 Hb_001824_040--Hb_004525_040 Hb_001894_070 Hb_001894_070 Hb_001824_040--Hb_001894_070 Hb_000107_110 Hb_000107_110 Hb_001824_040--Hb_000107_110 Hb_000671_130 Hb_000671_130 Hb_001824_040--Hb_000671_130 Hb_000008_190 Hb_000008_190 Hb_001824_040--Hb_000008_190 Hb_013394_050 Hb_013394_050 Hb_012760_050--Hb_013394_050 Hb_019181_030 Hb_019181_030 Hb_012760_050--Hb_019181_030 Hb_048476_060 Hb_048476_060 Hb_012760_050--Hb_048476_060 Hb_000062_090 Hb_000062_090 Hb_012760_050--Hb_000062_090 Hb_001195_410 Hb_001195_410 Hb_012760_050--Hb_001195_410 Hb_002217_500 Hb_002217_500 Hb_012760_050--Hb_002217_500 Hb_000389_030 Hb_000389_030 Hb_004525_040--Hb_000389_030 Hb_033152_070 Hb_033152_070 Hb_004525_040--Hb_033152_070 Hb_001021_010 Hb_001021_010 Hb_004525_040--Hb_001021_010 Hb_000256_230 Hb_000256_230 Hb_004525_040--Hb_000256_230 Hb_004126_040 Hb_004126_040 Hb_004525_040--Hb_004126_040 Hb_010042_020 Hb_010042_020 Hb_004525_040--Hb_010042_020 Hb_001894_070--Hb_000107_110 Hb_091349_010 Hb_091349_010 Hb_001894_070--Hb_091349_010 Hb_001894_070--Hb_010042_020 Hb_001894_070--Hb_000671_130 Hb_004881_030 Hb_004881_030 Hb_001894_070--Hb_004881_030 Hb_003052_180 Hb_003052_180 Hb_001894_070--Hb_003052_180 Hb_000107_110--Hb_004881_030 Hb_000107_110--Hb_010042_020 Hb_000107_110--Hb_033152_070 Hb_001104_130 Hb_001104_130 Hb_000107_110--Hb_001104_130 Hb_000107_110--Hb_003052_180 Hb_122636_010 Hb_122636_010 Hb_000671_130--Hb_122636_010 Hb_000671_130--Hb_091349_010 Hb_003207_020 Hb_003207_020 Hb_000671_130--Hb_003207_020 Hb_000671_130--Hb_033152_070 Hb_000671_130--Hb_000107_110 Hb_000671_130--Hb_048476_060 Hb_118507_010 Hb_118507_010 Hb_000008_190--Hb_118507_010 Hb_002486_050 Hb_002486_050 Hb_000008_190--Hb_002486_050 Hb_000008_190--Hb_001195_410 Hb_000008_190--Hb_004126_040 Hb_002660_110 Hb_002660_110 Hb_000008_190--Hb_002660_110 Hb_001481_150 Hb_001481_150 Hb_000008_190--Hb_001481_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.36453 0.454067 1.91075 0.406849 0.350168
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.423869 0.499653 0.289871 0.444847 0.480912

CAGE analysis