Hb_001733_040

Information

Type -
Description -
Location Contig1733: 100107-102169
Sequence    

Annotation

kegg
ID mdm:103403523
description flowering time control protein FCA-like
nr
ID XP_012084108.1
description PREDICTED: flowering time control protein FCA isoform X2 [Jatropha curcas]
swissprot
ID O04425
description Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA PE=1 SV=2
trembl
ID A0A067K7Z5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19024 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001733_040 0.0 - - PREDICTED: flowering time control protein FCA isoform X2 [Jatropha curcas]
2 Hb_000100_110 0.2661512648 - - -
3 Hb_028872_020 0.2833242061 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
4 Hb_000710_160 0.2852122337 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
5 Hb_000811_090 0.2959048999 - - hypothetical protein VITISV_043745 [Vitis vinifera]
6 Hb_000148_010 0.3028301701 - - -
7 Hb_000421_280 0.3034264041 - - polyprotein [Citrus endogenous pararetrovirus]
8 Hb_004662_020 0.3045128765 - - 40S ribosomal protein S9, putative [Ricinus communis]
9 Hb_007810_070 0.30676661 - - hypothetical protein VITISV_027174 [Vitis vinifera]
10 Hb_145620_010 0.3085581484 - - hypothetical protein VITISV_019786 [Vitis vinifera]
11 Hb_003183_010 0.3087940371 - - PREDICTED: uncharacterized protein LOC105785048, partial [Gossypium raimondii]
12 Hb_095937_010 0.3103937159 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
13 Hb_067730_010 0.3123617525 - - hypothetical protein OsJ_21419 [Oryza sativa Japonica Group]
14 Hb_001221_350 0.3131864171 - - conserved hypothetical protein [Ricinus communis]
15 Hb_122028_010 0.3136010777 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
16 Hb_001102_120 0.3178641204 - - -
17 Hb_006111_040 0.318337414 - - PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]
18 Hb_029238_030 0.3229195556 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
19 Hb_000060_060 0.3231552713 transcription factor TF Family: C2H2 hypothetical protein JCGZ_22940 [Jatropha curcas]
20 Hb_006810_020 0.3243398973 - - PREDICTED: NADPH:quinone oxidoreductase-like [Jatropha curcas]

Gene co-expression network

sample Hb_001733_040 Hb_001733_040 Hb_000100_110 Hb_000100_110 Hb_001733_040--Hb_000100_110 Hb_028872_020 Hb_028872_020 Hb_001733_040--Hb_028872_020 Hb_000710_160 Hb_000710_160 Hb_001733_040--Hb_000710_160 Hb_000811_090 Hb_000811_090 Hb_001733_040--Hb_000811_090 Hb_000148_010 Hb_000148_010 Hb_001733_040--Hb_000148_010 Hb_000421_280 Hb_000421_280 Hb_001733_040--Hb_000421_280 Hb_001221_350 Hb_001221_350 Hb_000100_110--Hb_001221_350 Hb_006111_040 Hb_006111_040 Hb_000100_110--Hb_006111_040 Hb_001793_030 Hb_001793_030 Hb_000100_110--Hb_001793_030 Hb_009851_090 Hb_009851_090 Hb_000100_110--Hb_009851_090 Hb_127552_050 Hb_127552_050 Hb_000100_110--Hb_127552_050 Hb_002631_270 Hb_002631_270 Hb_000100_110--Hb_002631_270 Hb_028872_020--Hb_001221_350 Hb_003462_170 Hb_003462_170 Hb_028872_020--Hb_003462_170 Hb_003183_010 Hb_003183_010 Hb_028872_020--Hb_003183_010 Hb_094484_010 Hb_094484_010 Hb_028872_020--Hb_094484_010 Hb_062192_050 Hb_062192_050 Hb_028872_020--Hb_062192_050 Hb_003427_040 Hb_003427_040 Hb_028872_020--Hb_003427_040 Hb_003746_020 Hb_003746_020 Hb_000710_160--Hb_003746_020 Hb_062192_060 Hb_062192_060 Hb_000710_160--Hb_062192_060 Hb_088080_030 Hb_088080_030 Hb_000710_160--Hb_088080_030 Hb_002686_060 Hb_002686_060 Hb_000710_160--Hb_002686_060 Hb_000699_080 Hb_000699_080 Hb_000710_160--Hb_000699_080 Hb_000920_020 Hb_000920_020 Hb_000710_160--Hb_000920_020 Hb_000811_090--Hb_000421_280 Hb_095937_010 Hb_095937_010 Hb_000811_090--Hb_095937_010 Hb_145620_010 Hb_145620_010 Hb_000811_090--Hb_145620_010 Hb_000907_050 Hb_000907_050 Hb_000811_090--Hb_000907_050 Hb_010964_030 Hb_010964_030 Hb_000811_090--Hb_010964_030 Hb_030987_010 Hb_030987_010 Hb_000811_090--Hb_030987_010 Hb_033095_050 Hb_033095_050 Hb_000148_010--Hb_033095_050 Hb_005542_170 Hb_005542_170 Hb_000148_010--Hb_005542_170 Hb_025528_010 Hb_025528_010 Hb_000148_010--Hb_025528_010 Hb_002249_200 Hb_002249_200 Hb_000148_010--Hb_002249_200 Hb_002800_020 Hb_002800_020 Hb_000148_010--Hb_002800_020 Hb_005031_010 Hb_005031_010 Hb_000148_010--Hb_005031_010 Hb_000421_280--Hb_145620_010 Hb_000421_280--Hb_095937_010 Hb_006237_030 Hb_006237_030 Hb_000421_280--Hb_006237_030 Hb_000659_090 Hb_000659_090 Hb_000421_280--Hb_000659_090 Hb_003915_030 Hb_003915_030 Hb_000421_280--Hb_003915_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0323666 0 0 0.0263389 0 0.0166715
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0290478 0 0.03486 0.241477

CAGE analysis