Hb_000923_060

Information

Type -
Description -
Location Contig923: 99425-104435
Sequence    

Annotation

kegg
ID pop:POPTR_0013s13030g
description hypothetical protein
nr
ID XP_012065058.1
description PREDICTED: uncharacterized protein LOC105628271 [Jatropha curcas]
swissprot
ID Q68FA7
description E3 ubiquitin-protein ligase MARCH3 OS=Xenopus tropicalis GN=march3 PE=2 SV=1
trembl
ID U5FSQ1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s13030g PE=4 SV=1
Gene Ontology
ID GO:0008270
description membrane associated ring finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62557: 100030-100203 , PASA_asmbl_62559: 101638-101787 , PASA_asmbl_62560: 103027-103464 , PASA_asmbl_62561: 100464-102916 , PASA_asmbl_62562: 100464-104037
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000923_060 0.0 - - PREDICTED: uncharacterized protein LOC105628271 [Jatropha curcas]
2 Hb_001019_100 0.1205490682 - - BnaC02g13240D [Brassica napus]
3 Hb_001486_250 0.1394949482 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]
4 Hb_000193_260 0.1412712661 - - PREDICTED: protein NEN1 [Jatropha curcas]
5 Hb_000076_210 0.1449109028 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
6 Hb_001804_090 0.1451085427 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]
7 Hb_006445_020 0.1489521652 - - hypothetical protein L484_026741 [Morus notabilis]
8 Hb_004218_010 0.1497862926 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
9 Hb_005332_080 0.1512209424 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
10 Hb_000796_010 0.1516058161 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
11 Hb_001147_050 0.1520582354 - - PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Jatropha curcas]
12 Hb_000122_190 0.1525015806 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
13 Hb_001287_040 0.1543221889 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
14 Hb_005214_170 0.1544278237 - - PREDICTED: uncharacterized protein LOC105636021 [Jatropha curcas]
15 Hb_000448_050 0.1552010387 - - PREDICTED: ubiquinol oxidase, mitochondrial [Jatropha curcas]
16 Hb_053709_050 0.1560868186 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_001633_090 0.1577773091 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
18 Hb_005656_170 0.1581135054 - - PREDICTED: uncharacterized protein LOC105637447 isoform X1 [Jatropha curcas]
19 Hb_006637_030 0.1588910312 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
20 Hb_000330_090 0.1596563653 - - ornithine carbamoyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000923_060 Hb_000923_060 Hb_001019_100 Hb_001019_100 Hb_000923_060--Hb_001019_100 Hb_001486_250 Hb_001486_250 Hb_000923_060--Hb_001486_250 Hb_000193_260 Hb_000193_260 Hb_000923_060--Hb_000193_260 Hb_000076_210 Hb_000076_210 Hb_000923_060--Hb_000076_210 Hb_001804_090 Hb_001804_090 Hb_000923_060--Hb_001804_090 Hb_006445_020 Hb_006445_020 Hb_000923_060--Hb_006445_020 Hb_003124_150 Hb_003124_150 Hb_001019_100--Hb_003124_150 Hb_003360_040 Hb_003360_040 Hb_001019_100--Hb_003360_040 Hb_000920_200 Hb_000920_200 Hb_001019_100--Hb_000920_200 Hb_000309_130 Hb_000309_130 Hb_001019_100--Hb_000309_130 Hb_002119_130 Hb_002119_130 Hb_001019_100--Hb_002119_130 Hb_006740_030 Hb_006740_030 Hb_001019_100--Hb_006740_030 Hb_000120_640 Hb_000120_640 Hb_001486_250--Hb_000120_640 Hb_004218_020 Hb_004218_020 Hb_001486_250--Hb_004218_020 Hb_001486_250--Hb_006740_030 Hb_004218_010 Hb_004218_010 Hb_001486_250--Hb_004218_010 Hb_001486_250--Hb_001019_100 Hb_065525_120 Hb_065525_120 Hb_001486_250--Hb_065525_120 Hb_002534_130 Hb_002534_130 Hb_000193_260--Hb_002534_130 Hb_061256_010 Hb_061256_010 Hb_000193_260--Hb_061256_010 Hb_026198_010 Hb_026198_010 Hb_000193_260--Hb_026198_010 Hb_000009_520 Hb_000009_520 Hb_000193_260--Hb_000009_520 Hb_002693_030 Hb_002693_030 Hb_000193_260--Hb_002693_030 Hb_001147_050 Hb_001147_050 Hb_000193_260--Hb_001147_050 Hb_008304_020 Hb_008304_020 Hb_000076_210--Hb_008304_020 Hb_000742_010 Hb_000742_010 Hb_000076_210--Hb_000742_010 Hb_001300_280 Hb_001300_280 Hb_000076_210--Hb_001300_280 Hb_172979_010 Hb_172979_010 Hb_000076_210--Hb_172979_010 Hb_001635_110 Hb_001635_110 Hb_000076_210--Hb_001635_110 Hb_000120_890 Hb_000120_890 Hb_000076_210--Hb_000120_890 Hb_000330_090 Hb_000330_090 Hb_001804_090--Hb_000330_090 Hb_146255_020 Hb_146255_020 Hb_001804_090--Hb_146255_020 Hb_007199_020 Hb_007199_020 Hb_001804_090--Hb_007199_020 Hb_001105_170 Hb_001105_170 Hb_001804_090--Hb_001105_170 Hb_001178_010 Hb_001178_010 Hb_001804_090--Hb_001178_010 Hb_002759_190 Hb_002759_190 Hb_001804_090--Hb_002759_190 Hb_068194_010 Hb_068194_010 Hb_006445_020--Hb_068194_010 Hb_027506_040 Hb_027506_040 Hb_006445_020--Hb_027506_040 Hb_002205_140 Hb_002205_140 Hb_006445_020--Hb_002205_140 Hb_000676_020 Hb_000676_020 Hb_006445_020--Hb_000676_020 Hb_003602_060 Hb_003602_060 Hb_006445_020--Hb_003602_060 Hb_118282_010 Hb_118282_010 Hb_006445_020--Hb_118282_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.26619 5.33189 13.3411 5.2634 2.13818 0.942231
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.78464 5.81007 6.12477 4.53583 5.87934

CAGE analysis