Hb_004218_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig4218: 28107-33444
Sequence    

Annotation

kegg
ID rcu:RCOM_1118640
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID XP_012091750.1
description PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID B9SH62
description Disease resistance protein RGA2, putative OS=Ricinus communis GN=RCOM_1118640 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41638: 25817-28213 , PASA_asmbl_41640: 30396-30537 , PASA_asmbl_41643: 33090-33260
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004218_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
2 Hb_003913_130 0.0874814979 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
3 Hb_004965_110 0.0892255126 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
4 Hb_000926_200 0.098340218 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
5 Hb_003266_030 0.1020473788 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
6 Hb_053709_050 0.1069101807 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
7 Hb_004218_020 0.1093985193 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000080_130 0.110298583 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
9 Hb_007904_230 0.1103735176 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
10 Hb_000035_160 0.1106767074 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
11 Hb_011671_260 0.1106885814 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
12 Hb_049575_010 0.1109668238 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
13 Hb_000193_260 0.1113136648 - - PREDICTED: protein NEN1 [Jatropha curcas]
14 Hb_001147_050 0.1118899136 - - PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Jatropha curcas]
15 Hb_021576_150 0.1119329696 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
16 Hb_001269_620 0.1132770234 - - PREDICTED: magnesium transporter MRS2-1 isoform X1 [Populus euphratica]
17 Hb_005016_040 0.1137203753 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X2 [Jatropha curcas]
18 Hb_006132_090 0.1153463493 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
19 Hb_000069_640 0.1162649047 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
20 Hb_073973_090 0.1172483989 - - Aminotransferase ybdL, putative [Ricinus communis]

Gene co-expression network

sample Hb_004218_010 Hb_004218_010 Hb_003913_130 Hb_003913_130 Hb_004218_010--Hb_003913_130 Hb_004965_110 Hb_004965_110 Hb_004218_010--Hb_004965_110 Hb_000926_200 Hb_000926_200 Hb_004218_010--Hb_000926_200 Hb_003266_030 Hb_003266_030 Hb_004218_010--Hb_003266_030 Hb_053709_050 Hb_053709_050 Hb_004218_010--Hb_053709_050 Hb_004218_020 Hb_004218_020 Hb_004218_010--Hb_004218_020 Hb_001357_200 Hb_001357_200 Hb_003913_130--Hb_001357_200 Hb_000025_350 Hb_000025_350 Hb_003913_130--Hb_000025_350 Hb_007533_040 Hb_007533_040 Hb_003913_130--Hb_007533_040 Hb_000638_130 Hb_000638_130 Hb_003913_130--Hb_000638_130 Hb_000140_090 Hb_000140_090 Hb_003913_130--Hb_000140_090 Hb_001014_060 Hb_001014_060 Hb_003913_130--Hb_001014_060 Hb_004965_110--Hb_003266_030 Hb_007904_230 Hb_007904_230 Hb_004965_110--Hb_007904_230 Hb_011671_260 Hb_011671_260 Hb_004965_110--Hb_011671_260 Hb_006132_090 Hb_006132_090 Hb_004965_110--Hb_006132_090 Hb_000926_080 Hb_000926_080 Hb_004965_110--Hb_000926_080 Hb_001900_140 Hb_001900_140 Hb_004965_110--Hb_001900_140 Hb_000035_160 Hb_000035_160 Hb_000926_200--Hb_000035_160 Hb_040819_010 Hb_040819_010 Hb_000926_200--Hb_040819_010 Hb_032202_100 Hb_032202_100 Hb_000926_200--Hb_032202_100 Hb_004984_030 Hb_004984_030 Hb_000926_200--Hb_004984_030 Hb_000926_200--Hb_053709_050 Hb_002316_140 Hb_002316_140 Hb_000926_200--Hb_002316_140 Hb_003266_030--Hb_007904_230 Hb_003266_030--Hb_011671_260 Hb_000086_080 Hb_000086_080 Hb_003266_030--Hb_000086_080 Hb_003411_090 Hb_003411_090 Hb_003266_030--Hb_003411_090 Hb_003266_030--Hb_000926_080 Hb_001633_090 Hb_001633_090 Hb_053709_050--Hb_001633_090 Hb_007850_030 Hb_007850_030 Hb_053709_050--Hb_007850_030 Hb_006637_030 Hb_006637_030 Hb_053709_050--Hb_006637_030 Hb_000603_160 Hb_000603_160 Hb_053709_050--Hb_000603_160 Hb_002693_030 Hb_002693_030 Hb_053709_050--Hb_002693_030 Hb_189216_010 Hb_189216_010 Hb_053709_050--Hb_189216_010 Hb_007810_010 Hb_007810_010 Hb_004218_020--Hb_007810_010 Hb_006740_030 Hb_006740_030 Hb_004218_020--Hb_006740_030 Hb_004218_020--Hb_003913_130 Hb_000120_640 Hb_000120_640 Hb_004218_020--Hb_000120_640 Hb_032717_060 Hb_032717_060 Hb_004218_020--Hb_032717_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.188728 0.696121 1.52381 0.998315 0.273259 0.550781
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.624705 0.96432 0.888571 0.554439 0.950866

CAGE analysis