Hb_000331_070

Information

Type -
Description -
Location Contig331: 69220-69576
Sequence    

Annotation

kegg
ID sbi:SORBI_03g006485
description SORBIDRAFT_03g006485, Sb03g006485; hypothetical protein
nr
ID XP_012075357.1
description PREDICTED: uncharacterized protein LOC105636644 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID C5XQ47
description Putative uncharacterized protein Sb03g006485 (Fragment) OS=Sorghum bicolor GN=Sb03g006485 PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC105636644

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34754: 64744-68407
cDNA
(Sanger)
(ID:Location)		 048_I19.ab1: 64746-68290

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_070 0.0 - - PREDICTED: uncharacterized protein LOC105636644 [Jatropha curcas]
2 Hb_001269_510 0.2065061488 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
3 Hb_002965_070 0.2196605686 - - PREDICTED: extensin [Jatropha curcas]
4 Hb_089114_010 0.2270163764 - - PREDICTED: uncharacterized protein LOC105646926 [Jatropha curcas]
5 Hb_109515_010 0.2306541001 - - -
6 Hb_006935_040 0.230904867 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
7 Hb_001776_200 0.2379373669 - - PREDICTED: COP9 signalosome complex subunit 2 isoform X2 [Pyrus x bretschneideri]
8 Hb_000809_140 0.2391911552 - - hypothetical protein JCGZ_12354 [Jatropha curcas]
9 Hb_000308_010 0.2447859845 - - PREDICTED: uncharacterized protein LOC105639684 [Jatropha curcas]
10 Hb_047442_010 0.2461712011 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
11 Hb_001414_050 0.2465448225 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
12 Hb_015531_010 0.2474060429 - - PREDICTED: uncharacterized protein LOC105636764 [Jatropha curcas]
13 Hb_005194_040 0.2485835742 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
14 Hb_173029_030 0.2524752951 - - conserved hypothetical protein [Ricinus communis]
15 Hb_021443_030 0.2533096537 - - PREDICTED: uncharacterized protein LOC105648566 [Jatropha curcas]
16 Hb_000185_230 0.2534163301 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_001894_160 0.2573760301 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000317_190 0.2585063195 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
19 Hb_092062_010 0.2621001484 - - hypothetical protein JCGZ_25129 [Jatropha curcas]
20 Hb_006694_030 0.2629006808 - - -

Gene co-expression network

sample Hb_000331_070 Hb_000331_070 Hb_001269_510 Hb_001269_510 Hb_000331_070--Hb_001269_510 Hb_002965_070 Hb_002965_070 Hb_000331_070--Hb_002965_070 Hb_089114_010 Hb_089114_010 Hb_000331_070--Hb_089114_010 Hb_109515_010 Hb_109515_010 Hb_000331_070--Hb_109515_010 Hb_006935_040 Hb_006935_040 Hb_000331_070--Hb_006935_040 Hb_001776_200 Hb_001776_200 Hb_000331_070--Hb_001776_200 Hb_002450_140 Hb_002450_140 Hb_001269_510--Hb_002450_140 Hb_000424_070 Hb_000424_070 Hb_001269_510--Hb_000424_070 Hb_001269_510--Hb_001776_200 Hb_000058_050 Hb_000058_050 Hb_001269_510--Hb_000058_050 Hb_000313_290 Hb_000313_290 Hb_001269_510--Hb_000313_290 Hb_003026_030 Hb_003026_030 Hb_001269_510--Hb_003026_030 Hb_047442_010 Hb_047442_010 Hb_002965_070--Hb_047442_010 Hb_002965_070--Hb_089114_010 Hb_000317_190 Hb_000317_190 Hb_002965_070--Hb_000317_190 Hb_000563_510 Hb_000563_510 Hb_002965_070--Hb_000563_510 Hb_000308_010 Hb_000308_010 Hb_002965_070--Hb_000308_010 Hb_033930_010 Hb_033930_010 Hb_002965_070--Hb_033930_010 Hb_061908_030 Hb_061908_030 Hb_089114_010--Hb_061908_030 Hb_089114_010--Hb_033930_010 Hb_089114_010--Hb_047442_010 Hb_089114_010--Hb_000317_190 Hb_001894_160 Hb_001894_160 Hb_089114_010--Hb_001894_160 Hb_001396_120 Hb_001396_120 Hb_109515_010--Hb_001396_120 Hb_109515_010--Hb_089114_010 Hb_001198_130 Hb_001198_130 Hb_109515_010--Hb_001198_130 Hb_001878_020 Hb_001878_020 Hb_109515_010--Hb_001878_020 Hb_002095_030 Hb_002095_030 Hb_109515_010--Hb_002095_030 Hb_000928_250 Hb_000928_250 Hb_006935_040--Hb_000928_250 Hb_006935_040--Hb_001894_160 Hb_000008_390 Hb_000008_390 Hb_006935_040--Hb_000008_390 Hb_015026_020 Hb_015026_020 Hb_006935_040--Hb_015026_020 Hb_003106_200 Hb_003106_200 Hb_006935_040--Hb_003106_200 Hb_001414_050 Hb_001414_050 Hb_006935_040--Hb_001414_050 Hb_011671_110 Hb_011671_110 Hb_001776_200--Hb_011671_110 Hb_001776_200--Hb_001414_050 Hb_001776_200--Hb_047442_010 Hb_005394_010 Hb_005394_010 Hb_001776_200--Hb_005394_010 Hb_002609_190 Hb_002609_190 Hb_001776_200--Hb_002609_190 Hb_001776_200--Hb_001894_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.21033 1.11459 2.41746 0.412707 0.603846 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.250587 0 0 0.0867674 0.331512

CAGE analysis