Hb_000317_300

Information

Type -
Description -
Location Contig317: 210179-213441
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_300 0.0 - - -
2 Hb_003368_130 0.3195200288 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_029920_040 0.3315369848 - - PREDICTED: uncharacterized protein LOC105635837 [Jatropha curcas]
4 Hb_011640_030 0.3525050443 - - 60S ribosomal protein L34A [Hevea brasiliensis]
5 Hb_000098_320 0.3557919311 - - -
6 Hb_004157_120 0.3639853903 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
7 Hb_000912_020 0.368175953 - - PREDICTED: uncharacterized protein LOC105645039 [Jatropha curcas]
8 Hb_001534_010 0.3798612916 - - Alpha-expansin 3 precursor [Theobroma cacao]
9 Hb_065378_010 0.38686248 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
10 Hb_003835_050 0.3909482528 - - Anthocyanidin 3-O-glucosyltransferase [Medicago truncatula]
11 Hb_008643_110 0.3922112513 - - BnaCnng39750D [Brassica napus]
12 Hb_003647_030 0.3922717544 - - PREDICTED: probable glutathione S-transferase [Populus euphratica]
13 Hb_015322_040 0.3926488519 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
14 Hb_002890_250 0.3942140646 - - PREDICTED: uncharacterized protein LOC102611387 isoform X2 [Citrus sinensis]
15 Hb_155384_010 0.3985473635 - - -
16 Hb_005438_010 0.4023606315 - - PREDICTED: uncharacterized protein LOC104902779 [Beta vulgaris subsp. vulgaris]
17 Hb_000186_340 0.4047268457 - - hypothetical protein POPTR_0011s01440g [Populus trichocarpa]
18 Hb_000215_170 0.4075192543 - - PREDICTED: uncharacterized protein LOC102596491 [Solanum tuberosum]
19 Hb_001150_030 0.4077256313 - - NADP-dependent oxidoreductase P1 isoform 3 [Theobroma cacao]
20 Hb_006775_010 0.4081468624 transcription factor TF Family: M-type AGAMOUS [Populus yunnanensis]

Gene co-expression network

sample Hb_000317_300 Hb_000317_300 Hb_003368_130 Hb_003368_130 Hb_000317_300--Hb_003368_130 Hb_029920_040 Hb_029920_040 Hb_000317_300--Hb_029920_040 Hb_011640_030 Hb_011640_030 Hb_000317_300--Hb_011640_030 Hb_000098_320 Hb_000098_320 Hb_000317_300--Hb_000098_320 Hb_004157_120 Hb_004157_120 Hb_000317_300--Hb_004157_120 Hb_000912_020 Hb_000912_020 Hb_000317_300--Hb_000912_020 Hb_000215_170 Hb_000215_170 Hb_003368_130--Hb_000215_170 Hb_000389_070 Hb_000389_070 Hb_003368_130--Hb_000389_070 Hb_019093_010 Hb_019093_010 Hb_003368_130--Hb_019093_010 Hb_000069_680 Hb_000069_680 Hb_003368_130--Hb_000069_680 Hb_006775_010 Hb_006775_010 Hb_003368_130--Hb_006775_010 Hb_065378_010 Hb_065378_010 Hb_029920_040--Hb_065378_010 Hb_004195_100 Hb_004195_100 Hb_029920_040--Hb_004195_100 Hb_002943_030 Hb_002943_030 Hb_029920_040--Hb_002943_030 Hb_150818_020 Hb_150818_020 Hb_029920_040--Hb_150818_020 Hb_029920_040--Hb_000912_020 Hb_001150_030 Hb_001150_030 Hb_029920_040--Hb_001150_030 Hb_011640_030--Hb_000098_320 Hb_137133_010 Hb_137133_010 Hb_011640_030--Hb_137133_010 Hb_005438_010 Hb_005438_010 Hb_011640_030--Hb_005438_010 Hb_001243_010 Hb_001243_010 Hb_011640_030--Hb_001243_010 Hb_001534_010 Hb_001534_010 Hb_011640_030--Hb_001534_010 Hb_015322_040 Hb_015322_040 Hb_011640_030--Hb_015322_040 Hb_000098_320--Hb_001534_010 Hb_000098_320--Hb_015322_040 Hb_000098_320--Hb_001243_010 Hb_000008_180 Hb_000008_180 Hb_000098_320--Hb_000008_180 Hb_000230_320 Hb_000230_320 Hb_000098_320--Hb_000230_320 Hb_081504_010 Hb_081504_010 Hb_004157_120--Hb_081504_010 Hb_000997_330 Hb_000997_330 Hb_004157_120--Hb_000997_330 Hb_161072_020 Hb_161072_020 Hb_004157_120--Hb_161072_020 Hb_000340_340 Hb_000340_340 Hb_004157_120--Hb_000340_340 Hb_001364_040 Hb_001364_040 Hb_004157_120--Hb_001364_040 Hb_000186_340 Hb_000186_340 Hb_004157_120--Hb_000186_340 Hb_000912_020--Hb_150818_020 Hb_008516_040 Hb_008516_040 Hb_000912_020--Hb_008516_040 Hb_011316_120 Hb_011316_120 Hb_000912_020--Hb_011316_120 Hb_002989_060 Hb_002989_060 Hb_000912_020--Hb_002989_060 Hb_000912_020--Hb_065378_010 Hb_003754_080 Hb_003754_080 Hb_000912_020--Hb_003754_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.150253 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.545329 0 0.231855 0.363886 0

CAGE analysis